Structure of PDB 5imr Chain r Binding Site BS02

Receptor Information

>5imr Chain r (length=180) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

MEYRLKAYYREGEKPSALRRAGKLPGVMYNRHLNRKVYVDLVEFDKVFRQ
ASIHHVIVLELPDGQSLPTLVRQVNLDKRRRRPEHVDFFVLSDEPVEMYV
PLRFVGTPAGVRAGGVLQEIHRDILVKVSPRNIPEFIEVDVSGLEIGDSL
HASDLKLPPGVELAVSPEETIAAVVPPEDV

Ligand information

>5imr Chain E (length=123) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

aaucccccgugcccauagcggcguggaaccacccguucccauuccgaaca
cggaagugaaacgcgccagcgccgaugguacugggcgggcgaccgccugg
gagaguaggucggugcgggggau

...<<<<<<<<<.....<<<<<<<<.....<<<<<...............
>>>..>>....>>>>>>.>><<<...<...<<<<<<<<....>>>>>>>>
.....>.>>>..>>>>>>>>>..

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5imr Structure of the GTP Form of Elongation Factor 4 (EF4) Bound to the Ribosome
Resolution	5.7 Å
Binding residue (original residue number in PDB)	R10 E11 E13 R19 Y29 H32 N34 K36 R72 Q73 R79 H85 D87 E97
Binding residue (residue number reindexed from 1)	R10 E11 E13 R19 Y29 H32 N34 K36 R72 Q73 R79 H85 D87 E97

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0008097	5S rRNA binding
GO:0019843	rRNA binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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External links

PDB	RCSB:5imr, PDBe:5imr, PDBj:5imr
PDBsum	5imr
PubMed	27137929
UniProt	Q5SHZ1\|RL25_THET8 Large ribosomal subunit protein bL25 (Gene Name=rplY)

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