Structure of PDB 8rjb Chain j Binding Site BS02

Receptor Information

>8rjb Chain j (length=86) Species: 9986 (Oryctolagus cuniculus)

TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSA
KAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPK

Ligand information

>8rjb Chain v (length=156)

cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuu
cgaacgcacuugcggccccggguuccucccggggcuacgccugucugagc
gucgcu

.........................................<<<<<<<<<
....>>>>.....<.<<<......>>.............>>>..>...>>
>....<<....>><<<<<<<<<.....>>>>>>>>>..............
......

Receptor-Ligand Complex Structure

Structure summary

• PDB: 8rjb UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
• Resolution: 2.69243 Å
• Binding residue (original residue number in PDB): R20 R21 C22 G23 N57 T59 G60 G62 R63 M64 R65 H66 L67 Y71 R72 R73 F74 H76 R79 E80 G81 T82 T83 P84 K87
• Binding residue (residue number reindexed from 1): R19 R20 C21 G22 N56 T58 G59 G61 R62 M63 R64 H65 L66 Y70 R71 R72 F73 H75 R78 E79 G80 T81 T82 P83 K86

Gene Ontology

Molecular Function

• GO:0003723 RNA binding
• GO:0003735 structural constituent of ribosome
• GO:0019843 rRNA binding
• GO:0046872 metal ion binding

Biological Process

• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:8rjb, PDBe:8rjb, PDBj:8rjb
• PDBsum: 8rjb
• PubMed: 38896445
• UniProt: U3KPD5|RL37_RABIT Large ribosomal subunit protein eL37 (Gene Name=RPL37)