Structure of PDB 8qfd Chain j Binding Site BS02

Receptor Information

TKGTSSFGKRRNKTHTLCRRCGSKAYHLQKSTCGKCGYPAKRKRKYNWSA
KAKRRNTTGTGRMRHLKIVYRRFRHGFREGTTPKPK

Ligand information

gacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagcu
agcugcgagaauuaaugugaauugcaggcgaucaucgacacuucgaacgc
acuugcggccccgggcccggggcuacgccugucugagcgucgcu

........................................<<<<<<<<<.
...>>>>.....<.<<<......>>.......>>>..>...>>>....<<
....>><<<<<<<<<>>>>>>>>>....................

Receptor-Ligand Complex Structure

Global view

Local view

Structure summary

PDB	8qfd The UFM1 E3 ligase recognizes and releases 60S ribosomes from ER translocons
Resolution	2.2 Å
Binding residue (original residue number in PDB)	R20 R21 N57 T59 G60 G62 R63 M64 R65 H66 L67 R72 F74 H76 R79 E80 G81 T82 T83 P84 K85 P86 K87
Binding residue (residue number reindexed from 1)	R19 R20 N56 T58 G59 G61 R62 M63 R64 H65 L66 R71 F73 H75 R78 E79 G80 T81 T82 P83 K84 P85 K86

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding
GO:0046872	metal ion binding

	Biological Process
GO:0006412	translation

	Cellular Component
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

External links