Structure of PDB 6ylg Chain j Binding Site BS02

Receptor Information
>6ylg Chain j (length=84) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKGTPSFGKRHNKSHTLCNRCGRRSFHVQKKTCSSCGYPAAKTRSYNWGA
KAKRRHTTGTGRMRYLKHVSRRFKNGFQTGSASK
Ligand information
>6ylg Chain 2 (length=154) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaaugugaaucaucgaaucuuug
aacgcacauugcgccccuugguauuccagggggcaugccuguuugagcgu
cauu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>...........>>>..)...>>>.
...<<.....>><<<<<<<<<....>>>>>>>>>................
....
Receptor-Ligand Complex Structure
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PDB6ylg Construction of the Central Protuberance and L1 Stalk during 60S Subunit Biogenesis.
Resolution3.0 Å
Binding residue
(original residue number in PDB)		R21 V29 K32 A42 T59 G62 R63 M64 R65 Y66 S71 R72 F74 K75 N76 Q79 T80 G81 A83 K85
Binding residue
(residue number reindexed from 1)		R20 V28 K31 A41 T58 G61 R62 M63 R64 Y65 S70 R71 F73 K74 N75 Q78 T79 G80 A82 K84
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008270 zinc ion binding
GO:0019843 rRNA binding
GO:0046872 metal ion binding
Biological Process
GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0030687 preribosome, large subunit precursor
GO:0044391 ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6ylg, PDBe:6ylg, PDBj:6ylg
PDBsum6ylg
PubMed32668200
UniProtP49166|RL37A_YEAST Large ribosomal subunit protein eL37A (Gene Name=RPL37A)

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