Structure of PDB 6q9a Chain j Binding Site BS02

Receptor Information
>6q9a Chain j (length=156) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ELQEKLIAVNRVSKTVKGGRIFSFTALTVVGDGNGRVGFGYGKAREVPAA
IQKAMEKARRNMINVALNNGTLQHPVKGVHTGSRVFMQPASEGTGIIAGG
AMRAVLEVAGVHNVLAKAYGSTNPINVVRATIDGLENMNSPEMVAAKRGK
SVEEIL
Ligand information
>6q9a Chain 4 (length=363) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<.<<<................<.<<.<.<....<.....<<..<<<<<<
<<<.(((((...>>>>>......)))))......................
........<<<<.<..<.<.....>.>....>>>>>..<<<<.<<<<...
<<<...((((.>>>...>>>>.....>>>>............))))....
<<<....<<<...(((..>>>....>>>.............)))....<<
<<..<<..<<...((.((..>>..>>..>>>>...........)).))..
..>>>>.....>>....>.....>>.>>.>.....<<<<<.......>>>
>>.>>.>>>....
Receptor-Ligand Complex Structure
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PDB6q9a How a circularized tmRNA moves through the ribosome.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		V18 R29 F33 V56
Binding residue
(residue number reindexed from 1)		V9 R20 F24 V47
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
GO:0046677 response to antibiotic
GO:1990145 maintenance of translational fidelity
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6q9a, PDBe:6q9a, PDBj:6q9a
PDBsum6q9a
PubMed30765567
UniProtP0A7W1|RS5_ECOLI Small ribosomal subunit protein uS5 (Gene Name=rpsE)

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