Structure of PDB 6hkt Chain e Binding Site BS02

Receptor Information
>6hkt Chain e (length=97) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSS
AVMALQEACEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGER
Ligand information
>6hkt Chain J (length=1122) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
atcgctgttcaatacatgcacaggatgtatatatctgacacgtgcctgga
gactagggagtaatccccttggcggttaaaacgcgggggacagcgcgtac
gtgcgtttaagcggtgctagagctgtctacgaccaattgagcggcctcgg
caccgggattctccagggcggccgcgtatagggtctcggggctgttcaat
acatgcacaggatgtatatatctgacacgtgcctggagactagggagtaa
tccccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcg
gtgctagagctgtctacgaccaattgagcggcctcggcaccgggattctc
cagggcggccgcgtatagggtctcggggctgttcaatacatgcacaggat
gtatatatctgacacgtgcctggagactagggagtaatccccttggcggt
taaaacgcgggggacagcgcgtacgtgcgtttaagcggtgctagagctgt
ctacgaccaattgagcggcctcggcaccgggattctccagggcggccgcg
tatagggtctcggggctgttcaatacatgcacaggatgtatatatctgac
acgtgcctggagactagggagtaatccccttggcggttaaaacgcggggg
acagcgcgtacgtgcgtttaagcggtgctagagctgtctacgaccaattg
agcggcctcggcaccgggattctccagggcggccgcgtatagggtctcgg
ggctgttcaatacatgcacaggatgtatatatctgacacgtgcctggaga
ctagggagtaatccccttggcggttaaaacgcgggggacagcgcgtacgt
gcgtttaagcggtgctagagctgtctacgaccaattgagcggcctcggca
ccgggattctccagggcggccgcgtatagggtctcggggctgttcaatac
atgcacaggatgtatatatctgacacgtgcctggagactagggagtaatc
cccttggcggttaaaacgcgggggacagcgcgtacgtgcgtttaagcggt
gctagagctgtctacgaccaattgagcggcctcggcaccgggattctcca
gggcggccgcgtatagggtgat
Receptor-Ligand Complex Structure
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PDB6hkt Structure of an H1-Bound 6-Nucleosome Array Reveals an Untwisted Two-Start Chromatin Fiber Conformation.
Resolution9.7 Å
Binding residue
(original residue number in PDB)		Y41 R42 P43 T45 R63 R72 R83 F84 Q85 R116 V117 T118
Binding residue
(residue number reindexed from 1)		Y4 R5 P6 T8 R26 R35 R46 F47 Q48 R79 V80 T81
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0005515 protein binding
GO:0030527 structural constituent of chromatin
GO:0045296 cadherin binding
GO:0046982 protein heterodimerization activity
Biological Process
GO:0006325 chromatin organization
GO:0006334 nucleosome assembly
GO:0010467 gene expression
GO:0032200 telomere organization
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005576 extracellular region
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005694 chromosome
GO:0016020 membrane
GO:0032991 protein-containing complex
GO:0070062 extracellular exosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6hkt, PDBe:6hkt, PDBj:6hkt
PDBsum6hkt
PubMed30392928
UniProtP68431|H31_HUMAN Histone H3.1 (Gene Name=H3C1)

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