Structure of PDB 5m1j Chain d5 Binding Site BS02

Receptor Information

>5m1j Chain d5 (length=109) Species: 4932 (Saccharomyces cerevisiae) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

LKDVVTREYTINLHKRLHGVSFKKRAPRAVKEIKKFAKLHMGTDDVRLAP
ELNQAIWKRGVKGVEYRLRLRISRKRNEEEDAKNPLFSYVEPVLVASAKG
LQTVVVEED

Ligand information

InChI=1S/Mg/q+2

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Mg

Name

MAGNESIUM ION

PDB chain

5m1j Chain d5 Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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PDB	5m1j Structural insights into ribosomal rescue by Dom34 and Hbs1 at near-atomic resolution.
Resolution	3.3 Å
Binding residue (original residue number in PDB)	G63 V64
Binding residue (residue number reindexed from 1)	G60 V61
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation
GO:0006450	regulation of translational fidelity

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Cellular Component

External links

PDB	RCSB:5m1j, PDBe:5m1j, PDBj:5m1j
PDBsum	5m1j
PubMed	27995908
UniProt	P0C2H8\|RL31A_YEAST Large ribosomal subunit protein eL31A (Gene Name=RPL31A)

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