Structure of PDB 7syp Chain d Binding Site BS02

Receptor Information
>7syp Chain d (length=67) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TSRVQPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVRE
GDVLTLLESEREARRLR
Ligand information
>7syp Chain z (length=249) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ccugugaggaacuacugucuucacgcagaaagcgucuagccauggcguua
guaugagugucgugcagccuccaggacccccccucccgggagagccauag
uggucugcggaaccggugaguacaccggaaugauuugggcgugcccccgc
aagacugcuagccgaguaguguugggucgcgaaaggccuugugguacugc
cugauagggugcuugcgagugccccgggaggucucguagaccgugcacc
<<<<.<<<<.....<<<<...<<<.<<....<<<<<.......>>>>>..
...>>.>>>....>>>>>>>>>>>>......<<<<<<<<<<<.<<<<<<<
<<<<<<<<<<..<<<<<<....>>>>>><<<.>>>.<<<<..>>>>>>>>
>.>>>>>>>><<<.....<<<......>>>....>>>....>>>>.>><<
<<....>>>><<..(((((.>>>>>>>>>>>.)))))............
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7syp Molecular architecture of 40S translation initiation complexes on the hepatitis C virus IRES.
Resolution4.0 Å
Binding residue
(original residue number in PDB)		K16 L18 R31 M35 T38 S39 S41 R66 R67 R69
Binding residue
(residue number reindexed from 1)		K14 L16 R29 M33 T36 S37 S39 R64 R65 R67
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006364 rRNA processing
GO:0006412 translation
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:0042274 ribosomal small subunit biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005783 endoplasmic reticulum
GO:0005791 rough endoplasmic reticulum
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0032040 small-subunit processome
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:7syp, PDBe:7syp, PDBj:7syp
PDBsum7syp
PubMed35822879
UniProtG1TIB4|RS28_RABIT Small ribosomal subunit protein eS28 (Gene Name=RPS28)

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