Structure of PDB 6j6n Chain c Binding Site BS02

Receptor Information
>6j6n Chain c (length=436) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KGGVWTNVEDQILKAAVQKYGTHQWSKVASLLQKKTARQSELRWNEYLNP
KLNFTEFSKEEDAQLLDLARELPNQWRTIADMMARPAQVCVERYNRLLES
EDSEDEEKEMLAEARARLLNTQGKKATRKIRERMLEESKRIAELQKRREL
KQAGINVAIKKPKKKYGTDIDYNEDIVYEQAPMPGIYDTSTEDRQIKKKF
EQFERKVNRKGLLTPKELLPHDSGQEDNERSNIKSGKQLKSRIRKFFASL
PSPKNDFEILSEDEKEEDAEIAEYEKEEDNFIEPPSQDAPRVSLVAVPLA
YSTLKNNPQSAIDNKYNLLVANAINKEPHMESRMQHITQGRTSMKIQFKT
AMPPTEVLLESIQSKVESIEQLQRKLQHVQPLEQQNNEMCSTLCHHSLPA
LIEGQRKYYADYYAYRQEIRSLEGRRKRLQAMLNSS
Ligand information
>6j6n Chain L (length=205) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
acgaaucucuuugccuuuuggcuuagaucaaguguaguaucuguucagug
uaacaacuaaugaccucagaggcucauauuuguuacaauacacauuuuuu
ggcacccaaaauaggacgggaagagacuuuuaaagugagacgucgcgacc
cucgcaggagucguucuugacuuuuuggucgcuugauguuucucucuucc
cguuc
................................................<<
<<<<<<..<..<.<<<<.>>>>.>..>..>>>>>>>>.............
..............<<<<<<<<<<.<<<<<.>>>>><<<<<<<<<<<<.<
<......<<<<<<....>>>>>>...>>>>>>..>>>>>>>>..>>>>>>
>>>>.
Receptor-Ligand Complex Structure
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PDB6j6n Structures of the Catalytically Activated Yeast Spliceosome Reveal the Mechanism of Branching.
Resolution3.86 Å
Binding residue
(original residue number in PDB)		H31 S34
Binding residue
(residue number reindexed from 1)		H23 S26
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000386 second spliceosomal transesterification activity
GO:0003677 DNA binding
GO:0005515 protein binding
Biological Process
GO:0000350 generation of catalytic spliceosome for second transesterification step
GO:0000398 mRNA splicing, via spliceosome
GO:0006397 mRNA processing
GO:0008380 RNA splicing
Cellular Component
GO:0000974 Prp19 complex
GO:0005634 nucleus
GO:0005681 spliceosomal complex
GO:0005737 cytoplasm
GO:0071006 U2-type catalytic step 1 spliceosome

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6j6n, PDBe:6j6n, PDBj:6j6n
PDBsum6j6n
PubMed30879786
UniProtQ03654|CEF1_YEAST Pre-mRNA-splicing factor CEF1 (Gene Name=CEF1)

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