Structure of PDB 7o0v Chain bj Binding Site BS02

Receptor Information
>7o0v Chain bj (length=39) Species: 1379270 (Gemmatimonas phototrophica) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GMTEEEARRFHGYMVTGTLGYVVVASVAHFLAWSWRPWF
Ligand information
Ligand IDV7N
InChIInChI=1S/C41H54O4/c1-33(20-12-21-35(3)22-13-23-36(4)24-14-28-38(6)40(43)44)18-10-11-19-34(2)25-15-29-39(32-42)30-16-26-37(5)27-17-31-41(7,8)45-9/h10-12,14-21,23-30,32H,13,22,31H2,1-9H3,(H,43,44)/b11-10+,20-12+,24-14+,25-15+,27-17+,30-16+,33-18+,34-19+,35-21+,36-23+,37-26+,38-28+,39-29-
InChIKeyXLPMAXZHNMJTID-YBNWOPDJSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7C/C(=C\C=C\C(=C\C=C\C=C(/C)\C=C\C=C(\C=C\C=C(/C)\C=C\CC(C)(C)OC)/C=O)\C)/CC/C=C(\C)/C=C/C=C(\C)/C(=O)O
CACTVS 3.385COC(C)(C)C/C=C/C(C)=C/C=C/C(C=O)=C/C=C/C(C)=C/C=C/C=C(C)/C=C/C=C(C)/CC/C=C(C)/C=C/C=C(C)/C(O)=O
OpenEye OEToolkits 2.0.7CC(=CC=CC(=CC=CC=C(C)C=CC=C(C=CC=C(C)C=CCC(C)(C)OC)C=O)C)CCC=C(C)C=CC=C(C)C(=O)O
CACTVS 3.385COC(C)(C)CC=CC(C)=CC=CC(C=O)=CC=CC(C)=CC=CC=C(C)C=CC=C(C)CCC=C(C)C=CC=C(C)C(O)=O
FormulaC41 H54 O4
Name(2~{E},4~{E},6~{E},10~{E},12~{E},14~{E},16~{E},18~{E},20~{E},22~{Z},24~{E},26~{E},28~{E})-23-methanoyl-31-methoxy-2,6,10,14,19,27,31-heptamethyl-dotriaconta-2,4,6,10,12,14,16,18,20,22,24,26,28-tridecaenoic acid
ChEMBL
DrugBank
ZINC
PDB chain7o0v Chain bj Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB7o0v 2.4- angstrom structure of the double-ring Gemmatimonas phototrophica photosystem.
Resolution2.5 Å
Binding residue
(original residue number in PDB)		R14 Y18 G22 T23 Y26
Binding residue
(residue number reindexed from 1)		R9 Y13 G17 T18 Y21
Annotation score1
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0042314 bacteriochlorophyll binding
GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
GO:0046872 metal ion binding
Biological Process
GO:0019684 photosynthesis, light reaction
Cellular Component
GO:0005886 plasma membrane
GO:0016020 membrane
GO:0030076 light-harvesting complex
GO:0030077 plasma membrane light-harvesting complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7o0v, PDBe:7o0v, PDBj:7o0v
PDBsum7o0v
PubMed35171663
UniProtA0A143BHS8

[Back to BioLiP]