Structure of PDB 8ovd Chain b Binding Site BS02
Receptor Information
>8ovd Chain b (length=149) Species:
1772
(Mycolicibacterium smegmatis) [
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CSAGQISQTTTQEPAVNGVNAQAGQVSLRNVHLRAPQQTDYVEPGTTVEL
LFVAANDSTEGSNKLKSITSDVGEVTLTGDSTVPADGVLIVGEPDGQIAV
TAEVELTKPITNGLLYDFTFTFEDGETTVAVPISAGEQPRRPVPPAGPG
Ligand information
Ligand ID
HEC
InChI
InChI=1S/C34H34N4O4.Fe/c1-7-21-17(3)25-13-26-19(5)23(9-11-33(39)40)31(37-26)16-32-24(10-12-34(41)42)20(6)28(38-32)15-30-22(8-2)18(4)27(36-30)14-29(21)35-25;/h7-8,13-16H,9-12H2,1-6H3,(H,39,40)(H,41,42);/q-4;+4/b21-7?,22-8?,26-13-,29-14-,30-15-,31-16-;
InChIKey
HXQIYSLZKNYNMH-LJNAALQVSA-N
SMILES
Software
SMILES
ACDLabs 10.04
O=C(O)CCC1=C(C2=CC6=C(C(=C/C)\C5=CC4=C(C(\C3=Cc7c(c(c8C=C1N2[Fe](N34)(N56)n78)CCC(=O)O)C)=C/C)C)C)C
OpenEye OEToolkits 1.5.0
CC=C1C(=C2C=C3C(=CC)C(=C4N3[Fe]56N2C1=Cc7n5c(c(c7C)CCC(=O)O)C=C8N6C(=C4)C(=C8CCC(=O)O)C)C)C
CACTVS 3.341
C\C=C1/C(=C2C=C3N4C(=Cc5n6c(C=C7N8C(=C(C)\C7=C/C)C=C1N2[Fe@@]468)c(C)c5CCC(O)=O)C(=C3C)CCC(O)=O)C
CACTVS 3.341
CC=C1C(=C2C=C3N4C(=Cc5n6c(C=C7N8C(=C(C)C7=CC)C=C1N2[Fe]468)c(C)c5CCC(O)=O)C(=C3C)CCC(O)=O)C
Formula
C34 H34 Fe N4 O4
Name
HEME C
ChEMBL
DrugBank
ZINC
PDB chain
8ovd Chain C Residue 301 [
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Receptor-Ligand Complex Structure
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PDB
8ovd
Long-range charge transfer mechanism of the III 2 IV 2 mycobacterial supercomplex.
Resolution
2.3 Å
Binding residue
(original residue number in PDB)
Q35 P37 A38
Binding residue
(residue number reindexed from 1)
Q12 P14 A15
Annotation score
4
External links
PDB
RCSB:8ovd
,
PDBe:8ovd
,
PDBj:8ovd
PDBsum
8ovd
PubMed
38902248
UniProt
A0R562
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