Structure of PDB 7jqc Chain a Binding Site BS02

Receptor Information

>7jqc Chain a (length=75) Species: 9986 (Oryctolagus cuniculus)

RDKLNNLVLFDKATYDKLCKEVPNYKLITPAVVSERLKIRGSLARAALQE
LLSKGLIKLVSKHRAQVIYTRNTKG

Ligand information

>7jqc Chain i (length=143)

aaaaaugugaucuugcuuguaaauacaauuuugagagguuaauaaauuac
aaguagugcuauuuuuguauuuagguuagcuauuuagcuuuacguuccag
gaugccuaguggcagccccacaauauccaggaagcccucucug

.<..............<<<<<<............((..........>>>>
>>............>..............................<<<..
<<.......<<.......>>.....>>..>>>.....))....

Receptor-Ligand Complex Structure

Structure summary

• PDB: 7jqc Nonstructural Protein 1 of SARS-CoV-2 Is a Potent Pathogenicity Factor Redirecting Host Protein Synthesis Machinery toward Viral RNA.
• Resolution: 3.3 Å
• Binding residue (original residue number in PDB): K66 R76 R111
• Binding residue (residue number reindexed from 1): K26 R36 R71

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome

Biological Process

• GO:0006364 rRNA processing
• GO:0042274 ribosomal small subunit biogenesis

Cellular Component

• GO:0005634 nucleus
• GO:0005730 nucleolus
• GO:0005737 cytoplasm
• GO:0005840 ribosome
• GO:0014069 postsynaptic density
• GO:0022626 cytosolic ribosome
• GO:0022627 cytosolic small ribosomal subunit
• GO:0045202 synapse
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:7jqc, PDBe:7jqc, PDBj:7jqc
• PDBsum: 7jqc
• PubMed: 33188728
• UniProt: G1TDB3|RS25_RABIT Small ribosomal subunit protein eS25 (Gene Name=RPS25)