Structure of PDB 5ahj Chain Y Binding Site BS02
Receptor Information
>5ahj Chain Y (length=212) Species:
4932
(Saccharomyces cerevisiae) [
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TTTLAFRFQGGIIVAVDSRATAGNWVASQTVKKVIEINPFLLGTMAGGAA
DCQFWETWLGSQCRLHELREKERISVAAASKILSNLVYQYKGAGLSMGTM
ICGYTRKEGPTIYYVDSDGTRLKGDIFCVGSGQTFAYGVLDSNYKWDLSV
EDALYLGKRSILAAAHRDAYSGGSVNLYHVTEDGWIYHGNHDVGELFWKV
KEEEGSFNNVIG
Ligand information
Ligand ID
7IM
InChI
InChI=1S/C29H46N4O10/c1-15(2)13-20(22(37)11-12-34)30-27(40)23(17(4)35)33-28(41)24(18(5)36)32-26(39)16(3)25(38)31-21(29(42)43)14-19-9-7-6-8-10-19/h6-10,15-18,20-24,34-37H,11-14H2,1-5H3,(H,30,40)(H,31,38)(H,32,39)(H,33,41)(H,42,43)/t16-,17+,18-,20+,21+,22+,23+,24+/m1/s1
InChIKey
AENNWPPXJYCTJY-JYDWQXCDSA-N
SMILES
Software
SMILES
OpenEye OEToolkits 1.7.6
CC(C)CC(C(CCO)O)NC(=O)C(C(C)O)NC(=O)C(C(C)O)NC(=O)C(C)C(=O)NC(Cc1ccccc1)C(=O)O
OpenEye OEToolkits 1.7.6
C[C@H]([C@@H](C(=O)N[C@@H]([C@H](C)O)C(=O)N[C@@H](CC(C)C)[C@H](CCO)O)NC(=O)[C@H](C)C(=O)N[C@@H](Cc1ccccc1)C(=O)O)O
CACTVS 3.385
CC(C)C[CH](NC(=O)[CH](NC(=O)[CH](NC(=O)[CH](C)C(=O)N[CH](Cc1ccccc1)C(O)=O)[CH](C)O)[CH](C)O)[CH](O)CCO
ACDLabs 12.01
O=C(NC(CC(C)C)C(O)CCO)C(NC(=O)C(NC(=O)C(C(=O)NC(C(=O)O)Cc1ccccc1)C)C(O)C)C(O)C
CACTVS 3.385
CC(C)C[C@H](NC(=O)[C@@H](NC(=O)[C@@H](NC(=O)[C@H](C)C(=O)N[C@@H](Cc1ccccc1)C(O)=O)[C@@H](C)O)[C@H](C)O)[C@@H](O)CCO
Formula
C29 H46 N4 O10
Name
N-[(2S)-3-{[(1S)-1-carboxy-2-phenylethyl]amino}-2-methyl-3-oxopropanoyl]-L-threonyl-N-[(3S,4S)-1,3-dihydroxy-6-methylheptan-4-yl]-L-allothreoninamide;
Macyranone-A
ChEMBL
DrugBank
ZINC
ZINC000263620231
PDB chain
5ahj Chain Y Residue 1215 [
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Receptor-Ligand Complex Structure
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PDB
5ahj
Macyranones: Structure, Biosynthesis, and Binding Mode of an Unprecedented Epoxyketone that Targets the 20S Proteasome.
Resolution
2.8 Å
Binding residue
(original residue number in PDB)
T1 A20 T21 G47 A49
Binding residue
(residue number reindexed from 1)
T1 A20 T21 G47 A49
Annotation score
1
Enzymatic activity
Catalytic site (original residue number in PDB)
T1 D17 R19 K33 G47 S131 D168 S171
Catalytic site (residue number reindexed from 1)
T1 D17 R19 K33 G47 S131 D168 S171
Enzyme Commision number
3.4.25.1
: proteasome endopeptidase complex.
Gene Ontology
Molecular Function
GO:0004298
threonine-type endopeptidase activity
Biological Process
GO:0051603
proteolysis involved in protein catabolic process
Cellular Component
GO:0005839
proteasome core complex
View graph for
Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5ahj
,
PDBe:5ahj
,
PDBj:5ahj
PDBsum
5ahj
PubMed
26050527
UniProt
P30656
|PSB5_YEAST Proteasome subunit beta type-5 (Gene Name=PRE2)
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