Structure of PDB 8rjb Chain X Binding Site BS02

Receptor Information

>8rjb Chain X (length=118) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

KIRTSPTFRRPKTLRLRRQPKYPRKSAPRRNKLDHYAIIKFPLTTESAMK
KIEDNNTLVFIVDVKANKHQIKQAVKKLYDIDVAKVNTLIRPDGEKKAYV
RLAPDYDALDVANKIGII

Ligand information

>8rjb Chain v (length=156) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacacauugaucaucgacacuu
cgaacgcacuugcggccccggguuccucccggggcuacgccugucugagc
gucgcu

.........................................<<<<<<<<<
....>>>>.....<.<<<......>>.............>>>..>...>>
>....<<....>><<<<<<<<<.....>>>>>>>>>..............
......

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8rjb UCSF ChimeraX: Meeting modern challenges in visualization and analysis.
Resolution	2.69243 Å
Binding residue (original residue number in PDB)	P49 T51 L52 R56 K63 R67 K70 H107 Q108
Binding residue (residue number reindexed from 1)	P11 T13 L14 R18 K25 R29 K32 H69 Q70

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome
GO:0019843	rRNA binding

	Biological Process
GO:0000027	ribosomal large subunit assembly
GO:0006412	translation

	Cellular Component
GO:0005634	nucleus
GO:0005737	cytoplasm
GO:0005840	ribosome
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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External links

PDB	RCSB:8rjb, PDBe:8rjb, PDBj:8rjb
PDBsum	8rjb
PubMed	38896445
UniProt	G1SE76\|RL23A_RABIT Large ribosomal subunit protein uL23 (Gene Name=RPL23A)

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