Structure of PDB 5xy3 Chain X Binding Site BS02

Receptor Information
>5xy3 Chain X (length=101) Species: 5722 (Trichomonas vaginalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRRPAFEHKAVKPVSLKHNDYKIIRGPVTSDKSTVKIENENTMTFWVDIK
ATKTEIAAAFNRLYKVKPVKVCTVITSKFVKKAYIRLPANVEAMNIATEI
G
Ligand information
>5xy3 Chain 4 (length=154) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aagucucuaagcaauggaugucuuggcuccucacacgaugaagaacgugg
cauaauguguuaaguaaccggaguugcaaacaucaugacagguuaaucuu
ugaaugcaaauugcgcuaaacucgaucgagaagcaugggugugacaguac
uaca
..........................................<<<.<<.(
(.....>>......<<<<<......)).............>>>>>...>>
>....<<.....>><<<...<<<<..>>>>.>>>................
....
Receptor-Ligand Complex Structure
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PDB5xy3 Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
Resolution3.2 Å
Binding residue
(original residue number in PDB)		K49 K54 K59 I86 K87
Binding residue
(residue number reindexed from 1)		K12 K17 K22 I49 K50
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5xy3, PDBe:5xy3, PDBj:5xy3
PDBsum5xy3
PubMed28809395
UniProtA2DUV8

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