Structure of PDB 6dzp Chain W Binding Site BS02

Receptor Information
>6dzp Chain W (length=192) Species: 246196 (Mycolicibacterium smegmatis MC2 155) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
TANIPNKLTANVRTRTGKGASRQARRDGKVPAVLYGHGTDPQHLELNARD
FAAVLRSHGTNAILTLDIEGTEQLALTKALDVHPIRRNIQHADLLVVQRG
EKVTVEVTVLVEGDATPGTLVTQDANTIEIEAEALSIPEQLTVSVEGVEA
GTQITAGQISLPEGVNLISDPELLVVNVVEAPSAEALEEEGA
Ligand information
>6dzp Chain B (length=118) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
guuacggcgguccauagcggcagggaaacgcccggucccaucccgaaccc
ggaagcuaagccugccagcgccgaugauacuacccauccggguggaaaag
uaggacaccgccgaacac
<<<.<<<<<<<.....<<<<<<<<.....<<<<<...............>
>>..>>....>>>>>>.>>.<<.......<<<<<<....>>>>>>.....
..>>..>>>>>>>>>>..
Receptor-Ligand Complex Structure
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PDB6dzp Zinc depletion induces ribosome hibernation in mycobacteria.
Resolution3.42 Å
Binding residue
(original residue number in PDB)		T19 G20 K21 R25 R28 R29 V36 Y38 G39 H46 K81 H94
Binding residue
(residue number reindexed from 1)		T16 G17 K18 R22 R25 R26 V33 Y35 G36 H43 K78 H91
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0008097 5S rRNA binding
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6dzp, PDBe:6dzp, PDBj:6dzp
PDBsum6dzp
PubMed30038002
UniProtA0R3D2

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