Structure of PDB 5lmv Chain W Binding Site BS02

Receptor Information

>5lmv Chain W (length=71) Species: 300852 (Thermus thermophilus HB8) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AKEKDTIRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPG
DRVVVEITPYDPTRGRIVYRK

Ligand information

InChI=1S/Mg/q+2

JLVVSXFLKOJNIY-UHFFFAOYSA-N

SMILES

Software	SMILES
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Mg+2]
CACTVS 3.341	[Mg++]

Formula

Mg

Name

MAGNESIUM ION

PDB chain

5lmv Chain W Residue 101 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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PDB	5lmv Large-Scale Movements of IF3 and tRNA during Bacterial Translation Initiation.
Resolution	4.9 Å
Binding residue (original residue number in PDB)	K4 T6 E56
Binding residue (residue number reindexed from 1)	K4 T6 E56
Annotation score	4

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003723	RNA binding
GO:0003743	translation initiation factor activity
GO:0019843	rRNA binding
GO:0043022	ribosome binding

	Biological Process
GO:0006412	translation
GO:0006413	translational initiation

	Cellular Component
GO:0005737	cytoplasm
GO:0005829	cytosol

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Cellular Component

External links

PDB	RCSB:5lmv, PDBe:5lmv, PDBj:5lmv
PDBsum	5lmv
PubMed	27662086
UniProt	Q5SHR1\|IF1_THET8 Translation initiation factor IF-1 (Gene Name=infA)

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