Structure of PDB 8j9j Chain V1 Binding Site BS02

Receptor Information
>8j9j Chain V1 (length=504) Species: 3039 (Euglena gracilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SIIQVPDKAPKTPAGFLQDKDRIFQNIYNDHGQGLKNAQKLGDWYRTKDL
LAKGPEWIIDQIKKSGLRGRGGAGFPSGLKWSFMPKKPPADGRPSYVVIN
ADESEPGTCKDREIMRMEPHKLVEGTLIAGFAMRARAAYIYVRGEFYNET
LSVEKAIKEAYDAGLLGDNACGSGYKFDIVLCRGAGAYICGEETGLIESL
EGKSGKPRLKPPFPANIGLWGCPTIVTNVETVSVSPTILRRGPEWFASFG
RKNNSGTKLFCISGHVNTPCTVEESMSIPLRELLEKHCGGVRGGWDNLLA
VIPGGSSVPVLPKSICDDVLMDFDALMDEGSALGTAAVIVMDKSTDLIKA
LARISMFYKNESCNQCTPCREGAGVMANIMDRIWKGNGFGPEVDMIKDIA
DNVELRSICALGAAAAWPIQGLHKHFREEMIQRIEDFTDISYNLHKDEMF
GHGAAFDWRRTPKTFHGTLDSFQDSTYRPPAANNNAYRGQYPHVPIYEKE
KSEA
Ligand information
Ligand IDSF4
InChIInChI=1S/4Fe.4S
InChIKeyLJBDFODJNLIPKO-UHFFFAOYSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 2.0.7[S]12[Fe]3[S]4[Fe]1[S]5[Fe]2[S]3[Fe]45
CACTVS 3.385S1[Fe]S[Fe]1.S2[Fe]S[Fe]2
FormulaFe4 S4
NameIRON/SULFUR CLUSTER
ChEMBL
DrugBank
ZINC
PDB chain8j9j Chain V1 Residue 580 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8j9j Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism.
Resolution3.03 Å
Binding residue
(original residue number in PDB)		I206 P224 S379 C380 N381 Q382 C383 C386 S424 I425 C426 L428
Binding residue
(residue number reindexed from 1)		I189 P207 S362 C363 N364 Q365 C366 C369 S407 I408 C409 L411
Annotation score4
Gene Ontology
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UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 02:15:53 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8j9j', asym_id = 'V1', bs = 'BS02', title = "Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism. "
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8j9j', asym_id='V1', bs='BS02', title="Euglena's atypical respiratory chain adapts to the discoidal cristae and flexible metabolism. ")
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0010181,0051287,0051539', uniprot = '', pdbid = '8j9j', asym_id = 'V1'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0010181,0051287,0051539', uniprot='', pdbid='8j9j', asym_id='V1')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>