Structure of PDB 1kqs Chain V Binding Site BS02
Receptor Information
>1kqs Chain V (length=154) Species:
2238
(Haloarcula marismortui) [
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MHALVQLRGEVNMHTDIQDTLEMLNIHHVNHCTLVPETDAYRGMVAKVND
FVAFGEPSQETLETVLATRAEPLEGDADVDDEWVAEHTDYDDISGLAFAL
LSEETTLREQGLSPTLRLHPPRGGHDGVKHPVKEGGQLGKHDTEGIDDLL
EAMR
Ligand information
>1kqs Chain 9 (length=122) [
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uuaggcggccacagcggugggguugccucccguacccaucccgaacacgg
aagauaagcccaccagcguuccggggaguacuggagugcgcgagccucug
ggaaacccgguucgccgccacc
...<<<<<<....<<<<<<<<......<<<<<...............>>>
..>>....>>>>>>.>><..<<<<<.....<<<<<<.<<....>>>>>>>
>....>>>>>.>.>>>>>>...
Receptor-Ligand Complex Structure
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PDB
1kqs
A pre-translocational intermediate in protein synthesis observed in crystals of enzymatically active 50S subunits.
Resolution
3.1 Å
Binding residue
(original residue number in PDB)
R8 H14 D50 K129 H130 P131 K133 E134
Binding residue
(residue number reindexed from 1)
R8 H14 D50 K129 H130 P131 K133 E134
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
GO:0019843
rRNA binding
Biological Process
GO:0000463
maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006412
translation
Cellular Component
GO:0005840
ribosome
GO:0015934
large ribosomal subunit
GO:0022625
cytosolic large ribosomal subunit
GO:1990904
ribonucleoprotein complex
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External links
PDB
RCSB:1kqs
,
PDBe:1kqs
,
PDBj:1kqs
PDBsum
1kqs
PubMed
11828326
UniProt
P14121
|RL30_HALMA Large ribosomal subunit protein uL30 (Gene Name=rpl30)
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