Structure of PDB 3jbo Chain U Binding Site BS02

Receptor Information
>3jbo Chain U (length=149) Species: 36329 (Plasmodium falciparum 3D7) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RMYGKGKGISSSTLPYKRKQPSWLKQKPSEIEDAIIKLAKKGQTPSQIGA
TLRDNYGIPQVKSVTGNKILRILRAQGIATTIPEDLYFLIKKAVSMRKHL
EKNKKDKDCKFRLILTESKIHRISRYYKRKKLLPSNWKYQSSTASALIA
Ligand information
>3jbo Chain AA (length=3192) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gauguuaggagggcaaauccgccgaauuuaagcauauaauuaagcggaag
aaaagaaaauaacuaugauuccuuuaguaacggcgagugaacaaggacca
gcucaaacgguuaauccuucguuuggugcaaaccuuucgacggaauuguc
guugaauuauuccaugaaugccuuuaauuugagcaaagugagcaggaaug
cuuccccauagagggugaaaggcccauaguucuuuuuaauuuauucauug
gaauuuuucaugucgagucguguucuuugagauuggagcacuaauacgug
ugauacauuucacauaaagcuaaauauauguaggagaccgauagcaaaca
aguaccgugagggaaagaugaaauaguacucaggaaugagcaauuaaaua
guaccugaaaucguuaagauggaacggauuaagagagaaaacaaguaaag
aggggaauauucucuucuuuauuaaaagaaacaucagugauuaauuuaau
uucaauaaagcaauccccugaaauuguuuucacuuucuccccgcacuaau
guggggaaaacuggcuuuauuucuucaauuauuuuuuuugcugaggaauu
uuaaaauuauuugaauuuuucuucuuauaauuuaaguuguuucuauacag
uacuuucuuaacccacucgucuugaaacacggaccaaggagucuagcaaa
ugugcaaguguauaugauucuuuaaacauuuuacgcauaauuaauguaau
auguccauuguagauuugugccccacuuugcauacaauaccgguaagcaa
augcuuuauugaguacgagcauauuugguaggacccgagaggcuuugaac
uaagcgugaugagauugaagucagacgaaagucugauggaggaucgaguu
gauacugacgugcaaaucguucauuucaaucacguuuaggggcgaaagac
uaaucgaaaagccuauuagcugguuauuuucgaaagaucucucaggaucg
cuggaguugauuaauauaauuuuaccagguagagauaaugauuagaggac
agggccuugaccuauucucaaacucccaauagguaaaaagggcgaaauaa
cucaauuuguauuucacucauauuaaauaaaauaacuccaagugggccau
uuuugguaagcagaacuggcgaugagggaugcuccuaacgcuuggauaag
gugccuaaauauucgcucaugagaucccauaaaagguguugguucauaug
aacuagcccugaaaauggauggcgcuaaagcggauuaccgauaccaagcc
auaaaaagaagaaaaaauuuuuuuuuagaaucuuuuuaugaguagaaaau
cgugggguuuguguugaagcgaaauacgugaguuuucguggaacaucucc
cuagugcagaucuugguggaaguagcaacuauucaaaugagaacuuugaa
gacugaaguggagaaggguuucuugucaacugugauugaacaagaguuag
ccgcuccuaagggauagcugaaaaguguuuaaagggguccccgucucaaa
agggaaacagguugauauuccugugccaauaguauuaugaguuagauggu
aacauauauauaaaugaacuccuuuacauaggcuuuacacucggggugcg
uuuucuuugcacuuuaccuuuauaacaaaccuuggaaucaauuuacuugg
agaagagguucguugaacucaauucaaaaauuuguuuuguagcaauagua
auucguaauuauccgaagugguaaggacuauccuugaaaaaaggagggaa
cggcuuugugcuuugcuacucuuaauacuuguaugagcguaccaacaacc
gcaucaggucuccaagguuaacagccucugguuaaauagaaaaaaguagg
uaagggaagucggcaaaauagauccguaacuucgggaaaaggauuggcuc
ugaggacauuauguuaacucagaacugaaacggacaaggggaauccgacu
guuuaauuaaaacauagcauugugaaaagccacaacugguauuaacacaa
ugugauuucugcccagugcuuugaaugucaacuugaugaaauucaaucaa
gcgcagguaaacggcgggaguaacuaugacucucuuaagguagccaaaug
ccucgucaucuaauuagugacgcgcaugaauggauuaacgagauucccac
ugucccuacuugcuaucuagcgaaaccacagccaagggaacgggcuuggc
aaaaucagcggggaaagaagacccuguugagcuuuacucuagucuggcuu
ugugaaacgacuuaagaggugcuacuuuuaaaguuguuuuacuuauccau
uuauagggaugaauuucccaauauggagacauagccagguggggaguuug
acuggggcgguacaucuguuaaauauuaacgcagauguccaaagacaagc
ucaaagagaacagaaaucucuuguagacuaaaaggggaaaagcuuguuug
auuucuauuuucagaacaaguagaaaacgugaaagcguggccuaucgauc
cuuuauauuugcaaaaugacguaaauuacuuacuacugugcauauagagg
ugucugaaaaguuaccacagggauaacuggcuuguggcugccaagcgcuc
cuagcgacguagcuuuuugauccuucgaugucggcucuuccuaucauugg
gacgcagaagucucaaagugucggauuguucacccgcuaauagggaacgu
gagcuggguuuagaccgucgugagacagguuaguuuuacccuacugauga
auuuuauuauauauauacauauaguauugugacaguaauccaacuuggua
cgagaggauuaguugguucagacaauugguacagcaauugguugacaaac
caguguugcgaagcuaagucuguuggauaauggcugaacgccucuuaagc
cagaaaccaugcugauuaaacaauacuaucuuuuuuguuugcuaauguaa
aagagaaauuauauauguaccgguacauaaauaauccuaucaccuuuuuc
gugagcugagcugugagcuaggcaauaguucuuuaacaacaaaaaagagc
acaaacuguagacgacuuuuuugccucagggugcuguaaacaugaaagua
aacuuuacgaucuguugaggcuuaucccuagugguaaagugu
.................<<<<<......<......>.......>>>>>..
..<.....<<....>>...<<<<<.....<<.....>>....>>>>>...
<<<...<<<.....<<<.<<<...<<<....>>>...>>>.>>>.....>
>>.<<<..<<<<<<<<<<<....<<<<...<<<<.....<<<<......>
>>>.((......<<<.....))>>>...>>>>...>>>>...>>>>>.>>
>>>>..>>>..........<<<<<<<........>>>>>>>......<<<
<<..[[((((>>>>>..>>>....>.........................
....<<....>>................<<<<....>>>>..........
.........................<<.<<<<<<<<<.......<<<<<<
<<<<<<<..>>>>>>>>>>>>>....<<<<<<<.<<<<<<..<<..<<<<
...<<<<<<<<.......<<<<<....>>>>>..<<.<<<<<<.......
.>>>>>>>>....>>>>>>>>......>>>>..>>..>>>>>>.......
....<<<<<<..<<<......>>>..>>>>>>.....>>>>>>>......
..>>>>>>>>>.>>..<<<<........>>>><<<<<<....<<<.<<<<
<<<<<..<<<...<<<..........>>>....>>>...<<....>>...
.......<<<<<.....<<.....>>......>>>>><<<<<<<<<<<..
..>>>.>>>>>.>>>...>>>>>>>>>.>>>..<<.<..<<<<<<<....
.<<<<<<<<<..<<<....<<<<<<<....>>>>>>>.....>>>....<
<..<<.<<........>>>>.>>.....>>>>>>>>>...<<.......>
>......>>>>>>...>..>.>>..<<<<<<....<<<<<....>>>>><
<<<<<<<<........<<.<<<<<<<.....<<<....<<<....<<<.<
<<<..>>>>.>>>....>>>..>>.>.....>>>>>...<<<.<<<<<<.
<.......>>>>>>>.>>>......>>>>....>>>>>>>.>>..<<<<.
<<<<<.....>>>>>.>>>>....<<<......>>>...<<<<<<....<
<<(((.....<<<<<<.....<<..........<<<.<<<<<<<<<..>>
>>>>>>>>>>..........))).>>...>>>>>>.>>>....>>>>>><
<<<<<<<<...<<<<<<..>>>>>>......>>>>>>>>>....>>>>>>
..<<<<<..<<<......<<<<<<.<<....>>>>>>>>...>>>...>>
>>>........>>>>>><<.....<<.....<<<<<<.......>>>>>>
<<<<.....<<<<<.<<...<<<<<<...<.......>.>>>>>>....(
(<<<<<<...<<<<..<<<....>>>.......<<<<.>>>>.>>>>...
.>>...<<<<<........>>>>>))<...<<<<<<<.<<<<...<<<..
..>>>...........((<<<<<<...<<<<.<<<<<<<<<..<<<<<<<
...{{..>>>>>>....<<...<<<<.<<<<<<.....<<<.....>>>.
....>>>>>>.>>>>....<<<..<<<....>>>..>>>.>>.....<..
<.<....>.>..>>..>>>.>>>>>>.>>>>.........>>>>>>....
.<<<...<..>...>>>>>>>.>>>>>>>.....>>>>>..>>.....<<
......>>>>>>>.<<<<.....>>>>..>>>>...<<<<....<<<<<<
<<.<<...............<<<<<....<....>.....>>>>><<.<<
<<<<<<<<<.>>>>>..>>>>>>.>>............<<<<<<<<<..<
<<.........>>>..<<<<<<<.....<<<<....>>>>......>>>>
>>>...<<..<<<..<<<<<<....<<<....<<<<......>>>>....
>>>.>>>>..>>>>><<<<<<.......>>>>>>........<.......
....<<<<<.......>>>>>.....>.....>>....>>.>>>>>>>..
...>>.>>>>>>>>.>>>>>>....>>....<<<<<........>>>>>.
...<<<<<..<<<.<<......<<<<.<<<<<<..<<<<<.<<<<<<<<.
.<<<<<<<<<<<<<<<<<......>>>>>>.>>>>>>>>>>>...<<<<<
......<<.....)).>>....>>>>>.....>>>>>>>>..>>>>>...
<<<.....>>>..<<<<<<...........>>>>>>..<<...<<<<<<<
...<<<<<<.......>>>>>>.....<<...(((>>....>>>>>>>..
.<<<<<<<<<.......>>>>>>>>>.<<<....>>>.>>)))......<
<<<<<<<..<<<.))))...<<<<.....>>>>....]]>>>>>>>>>>>
.........>>>>..>>>>>>.......<<.<.<.<<<<<<...<<....
...>>...>>>>>>...>>.>.>.......<<<<<.<<<<<<..<<<<<<
<<<......>>>>>>..>>>.<<<.<.....>.>>>.....>>>>>..>.
..>>>.>>....<<<<<<<....>>>.>>>>....>>..>>>.>>>>>..
....<<<.<<<..>>>..>>><<<<<<<<<..<<<<.<.<<<<<<.....
..........>>>>>>.><<<<<....<<<...<<<<<<<<<<}}..>>>
>>..>>>>>...>>>..>>>>>.<<<....<<<<<............>>>
>>....>>>.>>>>.....>>>>>>>>>.<<<<<<<<<.......<<<..
....<<.......<<<<<<<<>>>>>>>>.....>>......<<<..<<<
<<<.<.....>>>>>>>..>>>.............>>>>>>>>>>>>.<<
<<.<<.............>>..<<<..<<<<.<<<....<<<.<<..<<<
<<.>>>>>..>>>>>...>>>....>>>>...>>>...>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3jbo Dynamical features of the Plasmodium falciparum ribosome during translation.
Resolution5.8 Å
Binding residue
(original residue number in PDB)
H123 K140
Binding residue
(residue number reindexed from 1)
H121 K138
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0070181 small ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005730 nucleolus
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function

View graph for
Biological Process

View graph for
Cellular Component
External links
PDB RCSB:3jbo, PDBe:3jbo, PDBj:3jbo
PDBsum3jbo
PubMed26432834
UniProtQ8IDB0

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