Structure of PDB 3j45 Chain T Binding Site BS02

Receptor Information
>3j45 Chain T (length=100) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIREERLLKVLRAPHVSEKASTAMEKSNTIVLKVAKDATKAEIKAAVQKL
FEVEVEVVNTLVVKGKVKRHGQRIGRRSDWKKAYVTLKEGQNLDFVGGAE
Ligand information
>3j45 Chain 2 (length=36) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaggguuccuguccaacguuaaucggggcaggguga
.......<<<<<<...<<.....>>.>>>>>>....
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB3j45 Structure of the SecY channel during initiation of protein translocation.
Resolution9.5 Å
Binding residue
(original residue number in PDB)		H15 S17 E18 K19 M24 N59 T60 L61 K64 K66 K68 R69 H70 K82 Y84
Binding residue
(residue number reindexed from 1)		H15 S17 E18 K19 M24 N59 T60 L61 K64 K66 K68 R69 H70 K82 Y84
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0005515 protein binding
GO:0019843 rRNA binding
Biological Process
GO:0000027 ribosomal large subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:3j45, PDBe:3j45, PDBj:3j45
PDBsum3j45
PubMed24153188
UniProtP0ADZ0|RL23_ECOLI Large ribosomal subunit protein uL23 (Gene Name=rplW)

[Back to BioLiP]