Structure of PDB 6z6n Chain Sf Binding Site BS02
Receptor Information
>6z6n Chain Sf (length=67) Species:
9606
(Homo sapiens) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
YTTPKKNKHKRKKVKLAVLKYYKVDENGKISRLRRECPSDECGAGVFMAS
HFDRHYCGKCCLTYCFN
Ligand information
Ligand ID
ZN
InChI
InChI=1S/Zn/q+2
InChIKey
PTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
Formula
Zn
Name
ZINC ION
ChEMBL
CHEMBL1236970
DrugBank
DB14532
ZINC
PDB chain
6z6n Chain Sf Residue 200 [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
6z6n
Structure and function of yeast Lso2 and human CCDC124 bound to hibernating ribosomes.
Resolution
2.9 Å
Binding residue
(original residue number in PDB)
S123 C144
Binding residue
(residue number reindexed from 1)
S39 C60
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
GO:0005515
protein binding
GO:0031386
protein tag activity
GO:0031625
ubiquitin protein ligase binding
GO:0046872
metal ion binding
Biological Process
GO:0002181
cytoplasmic translation
GO:0006412
translation
GO:0016567
protein ubiquitination
GO:0019941
modification-dependent protein catabolic process
Cellular Component
GO:0005615
extracellular space
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005730
nucleolus
GO:0005737
cytoplasm
GO:0005741
mitochondrial outer membrane
GO:0005789
endoplasmic reticulum membrane
GO:0005829
cytosol
GO:0005840
ribosome
GO:0005886
plasma membrane
GO:0010008
endosome membrane
GO:0016020
membrane
GO:0022626
cytosolic ribosome
GO:0022627
cytosolic small ribosomal subunit
GO:0030666
endocytic vesicle membrane
GO:0031982
vesicle
GO:0032040
small-subunit processome
GO:0045202
synapse
GO:0070062
extracellular exosome
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:6z6n
,
PDBe:6z6n
,
PDBj:6z6n
PDBsum
6z6n
PubMed
32687489
UniProt
P62979
|RS27A_HUMAN Ubiquitin-ribosomal protein eS31 fusion protein (Gene Name=RPS27A)
[
Back to BioLiP
]