Structure of PDB 5dat Chain S9 Binding Site BS02
Receptor Information
>5dat Chain S9 (length=185) Species:
559292
(Saccharomyces cerevisiae S288C) [
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PRAPRTYSKTYSTPKRPYESSRLDAELKLAGEFGLKNKKEIYRISFQLSK
IRRAARDLLTRDEKDPKRLFEGNALIRRLVRVGVLSEDKKKLDYVLALKV
EDFLERRLQTQVYKLGLAKSVHHARVLITQRHIAVGKQIVNIPSFMVRLD
SEKHIDFAPTSPFGGARPGRVARRNAARKAEASGE
Ligand information
Ligand ID
OHX
InChI
InChI=1S/6H2N.Os/h6*1H2;/q6*-1;+6
InChIKey
OWCQTVJQFLTQTE-UHFFFAOYSA-N
SMILES
Software
SMILES
ACDLabs 12.01
CACTVS 3.370
OpenEye OEToolkits 1.7.0
N[Os](N)(N)(N)(N)N
Formula
H12 N6 Os
Name
osmium (III) hexammine;
osmium(6+) hexaazanide
ChEMBL
DrugBank
ZINC
PDB chain
5dat Chain S9 Residue 202 [
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Receptor-Ligand Complex Structure
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PDB
5dat
Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
Resolution
3.15 Å
Binding residue
(original residue number in PDB)
Y8 S9
Binding residue
(residue number reindexed from 1)
Y7 S8
Annotation score
1
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
GO:0005515
protein binding
GO:0019843
rRNA binding
Biological Process
GO:0000462
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364
rRNA processing
GO:0006412
translation
GO:0042254
ribosome biogenesis
GO:0042274
ribosomal small subunit biogenesis
Cellular Component
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005730
nucleolus
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005840
ribosome
GO:0015935
small ribosomal subunit
GO:0022627
cytosolic small ribosomal subunit
GO:0030686
90S preribosome
GO:0032040
small-subunit processome
GO:0043226
organelle
GO:1990904
ribonucleoprotein complex
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:5dat
,
PDBe:5dat
,
PDBj:5dat
PDBsum
5dat
PubMed
UniProt
O13516
|RS9A_YEAST Small ribosomal subunit protein uS4A (Gene Name=RPS9A)
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