Structure of PDB 8vs9 Chain S03 Binding Site BS02

Receptor Information
>8vs9 Chain S03 (length=206) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GQKVHPNGIRLGIVKPWNSTWFANTKEFADNLDSDFKVRQYLTKELAKAS
VSRIVIERPAKSIRVTIHTARPGIVIGKKGEDVEKLRKVVADIAGVPAQI
NIAEVRKPELDAKLVADSITSQLERRVMFRRAMKRAVQNAMRLGAKGIKV
EVSGRLGGAEIARTEWYREGRVPLHTLRADIDYNTSEAHTTYGVIGVKVW
IFKGEI
Ligand information
>8vs9 Chain TMRN (length=363) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ggggcugauucuggauucgacgggauuugcgaaacccaaggugcaugccg
aggggcgguuggccucguaaaaagccgcaaaaaauagucgcaaacgacga
aaacuacgcuuuagcagcuuaauaaccugcuuagagcccucucucccuag
ccuccgcucuuaggacggggaucaagagaggucaaacccaaaagagaucg
cguggaagcccugccugggguugaagcguuaaaacuuaaucaggcuaguu
uguuaguggcguguccguccgcagcuggcaagcgaauguaaagacugacu
aagcauguaguaccgaggauguaggaauuucggacgcggguucaacuccc
gccagcuccacca
<<<<<<<.............<<<<<<<<.......<...<<<..<<<<..
....<<<<<..............>>>>>......................
.......<<<<<<<<<<.........>>>>.>>>>>><<<<<<<<<<<..
.....[(((((.....>>>>....>>>>>>>..........))))).].<
<<.....<<<...((...>>>.....>>>.............))......
<<<<....<<...((.....>>....>>>>................))..
..>>>>.....>>>...>......>>>>>>>>.....<<<.......>>>
..>>>>>>>....
Receptor-Ligand Complex Structure
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PDB8vs9 Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.
Resolution3.9 Å
Binding residue
(original residue number in PDB)		R71 P72 G73 I76 K78 K79 G80 N101 I102 R106 Q122 R125 R130 R131 K134 R135 R142 R163
Binding residue
(residue number reindexed from 1)		R71 P72 G73 I76 K78 K79 G80 N101 I102 R106 Q122 R125 R130 R131 K134 R135 R142 R163
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003676 nucleic acid binding
GO:0003723 RNA binding
GO:0003729 mRNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8vs9, PDBe:8vs9, PDBj:8vs9
PDBsum8vs9
PubMed38500588
UniProtB7MCS9|RS3_ECO45 Small ribosomal subunit protein uS3 (Gene Name=rpsC)

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