Structure of PDB 8caz Chain S Binding Site BS02

Receptor Information
>8caz Chain S (length=83) Species: 679895 (Escherichia coli BW25113) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PRSLKKGPFIDLHLLKKVEKAVESGDKKPLRTWSRRSTIFPNMIGLTIAV
HNGRQHVPVFVTDEMVGHKLGEFAPTRTYRGHA
Ligand information
>8caz Chain A (length=460) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cccgcacaagcgguggagcaugugguuuaauucgaugcaacgcgaagaac
cuuaccuggucuugacauccacggaaguuuucagagaugagaaugugccu
ucgggaaccgugagacaggugcugcauggcugucgucagcucguguugug
aaauguuggguuaagucccgcaacgagcgcaacccuuauccuuuguugcc
agcgguccggccgggaacucaaaggagacugccagugauaaacuggagga
agguggggaugacgucaagucaucauggcccuuacgaccagggcuacaca
cgugcuacaauggcgcauacaaagagaagcgaccucgcgagagcaagcgg
accucauaaagugcgucguaguccggauuggagucugcaacucgacucca
ugaagucggaaucgcuaguaaucguggaucagaaugccacggugaauacg
uucccgggcc
<<<<.<<.<<<<<<..<<<<<<<<<<......<<........>>......
....<<<<<<<......<<<<<<<..<<<<<<<....>>>>>>>...<..
...>...>>>>>.>>.<<<.<<<..<<<<<<.......<<<<<<<<<...
.>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<<<<...<<
..<<<.....>>>>>....>>>>>>>.....<<<<<.....>>>>>....
....>>>>.........>>>...>>>>>>>>>...>>>>>>>...>>.>>
>>>>>>.....<<<<<<<.....<<<..<<...<<<....>>>...>>..
..>>>.....>>>>>>>......<....<<<<<<<........>>>>>>>
....>.....>>>>>>....<<<<<<<.........>>>>>>>......>
>...>>>>..
Receptor-Ligand Complex Structure
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PDB8caz Structural conservation of antibiotic interaction with ribosomes.
Resolution2.11 Å
Binding residue
(original residue number in PDB)		P2 R3 S4 L5 K6 K7 F10 H14 K18 W34 R36 R37 H52 N53 G54 R55 K70 G72 E73 T77 R78 T79 Y80 H83
Binding residue
(residue number reindexed from 1)		P1 R2 S3 L4 K5 K6 F9 H13 K17 W33 R35 R36 H51 N52 G53 R54 K69 G71 E72 T76 R77 T78 Y79 H82
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0002181 cytoplasmic translation
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0015935 small ribosomal subunit
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8caz, PDBe:8caz, PDBj:8caz
PDBsum8caz
PubMed37550453
UniProtP0A7U3|RS19_ECOLI Small ribosomal subunit protein uS19 (Gene Name=rpsS)

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