Structure of PDB 5xy3 Chain S Binding Site BS02

Receptor Information
>5xy3 Chain S (length=175) Species: 5722 (Trichomonas vaginalis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SLKQYLVIGRPYPTKEIPNPPAVRVQVFAPDEVIAKSKFWTVAQRIARLK
KAHGEVLAVKHVIEPEPTRVKNYGVWLSYRSTRNHHNVYKEYRDTTTEGA
ATKMLAELAGTHDVSADNISIIKIAEVADKDLVHKNISQFTHENIKFPML
KQSIRAPTASARKVFAATRPTVCGF
Ligand information
>5xy3 Chain 3 (length=117) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
gaagcggccacacccggcuggcaacauccagcuccacuccgaaccuggaa
auuaagcagucgcgggccacaucaguacugggcugggcgacuucccggga
acgugcggugcuugcuu
<<...<<.....<<<<<<<<.....<<<<<<.............>>>>..
>>....>>>>>>.>><<<.<<<.....<<<<<..<<....>>.>>>>>..
..>>>.>>>.>>...>>
Receptor-Ligand Complex Structure
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PDB5xy3 Cryo-EM structures of the 80S ribosomes from human parasites Trichomonas vaginalis and Toxoplasma gondii
Resolution3.2 Å
Binding residue
(original residue number in PDB)		S38 T42 Q45 R49 K51 A53 D118 N119
Binding residue
(residue number reindexed from 1)		S37 T41 Q44 R48 K50 A52 D117 N118
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:5xy3, PDBe:5xy3, PDBj:5xy3
PDBsum5xy3
PubMed28809395
UniProtA2EP03

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