Structure of PDB 5k0y Chain S Binding Site BS02

Receptor Information
>5k0y Chain S (length=422) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QATINIGTIGHVAHGKSTVVKAISGVHTVRFKNELERNITIKLGYANAKI
YKLDDPSCPRPECYRSCGSSTPDEFPTDIPGTKGNFKLVRHVSFVDCPGH
DILMATMLNGAAVMDAALLLIAGNESCPQPQTSEHLAAIEIMKLKHILIL
QNKIDLVKESQAKEQYEQILAFVQGTVAEGAPIIPISAQLKYNIEVVCEY
IVKKIPVPPRDFTSEPRLIVIRSFDVNKPGCEVDDLKGGVAGGSILKGVL
KVGQEIEVRPGIVSKDSEGKLMCKPIFSKIVSLFAEHNDLQYAAPGGLIG
VGTKIDPTLCRADRMVGQVLGAVGALPEIFTELEISYFLLRRLLGVRTEG
DKKAAKVQKLSKNEVLMVNIGSLSTGGRVSAVKADLGKIVLTNPVCTEVG
EKIALSRRVEKHWRLIGWGQIR
Ligand information
>5k0y Chain d (length=17) Species: 9986 (Oryctolagus cuniculus) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
SEKEYVEMLDRLYSKLP
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5k0y eIF3 Peripheral Subunits Rearrangement after mRNA Binding and Start-Codon Recognition.
Resolution5.8 Å
Binding residue
(original residue number in PDB)		Q202 I205 E210 A213 Y217 I234 P236 Y243 N244 E246 V247 Y251
Binding residue
(residue number reindexed from 1)		Q151 I154 E159 A162 Y166 I183 P185 Y192 N193 E195 V196 Y200
Enzymatic activity
Catalytic site (original residue number in PDB) A53 K67 S68 T91 H151
Catalytic site (residue number reindexed from 1) A2 K16 S17 T40 H100
Enzyme Commision number 3.6.5.3: protein-synthesizing GTPase.
Gene Ontology
Molecular Function
GO:0000049 tRNA binding
GO:0003924 GTPase activity
GO:0005525 GTP binding

View graph for
Molecular Function
External links
PDB RCSB:5k0y, PDBe:5k0y, PDBj:5k0y
PDBsum5k0y
PubMed27373335
UniProtG1SRA8

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