Structure of PDB 6lqq Chain RV Binding Site BS02

Receptor Information
>6lqq Chain RV (length=190) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
PKTQPKVIRFNGPSDVYVPPSKKTQKLLRSENLQNDLELQQFLRESHLLS
AFNGIVYQDDQVIGKARSRTLEMRLNRLSRVNGHQDKINKLEKVPMHIRR
GMIDKHVKRIKKYEQEAAEGGIVLSKVKKGQFRKIESTYKKDIERRIGGS
IKARDKEKATKRERGLKISSVGRSTRNGLIVSKRDIARIS
Ligand information
>6lqq Chain 5A (length=375) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugcgaaagcaguugaagacaaguggcuugucguucguuaaaauggccucg
ucaaacggugguacagcguguuuaauugacauggguugauaaccugaaca
gucucaucguggccauuggugagcagcgaaggauuugguggauuacuagc
uaauagcaaucuauuucaaagaauucaaacuugggggaaugccuuguuga
auagccggucgcaagacugugauucuucaaguguaaccuccucucuauca
aacguaccgguaucuguuuggugggaaacucaaagagugcuaugguaugg
ugacggagugcgcuggucaagaguguaaaagcuuuuugaacagagagcau
uuccggcagcagagauuucagcugu
<<<....>>>...<<<<<<<<<<.>>>>>>>.>>>..............<
<<<<<<<.<<...>>.>>>......>>>>>..<<<<<<.>>>>>>.....
..<<<<<<<<<..>>>.>>>>>>.........................<<
<...>>>.........................<<<<<..<<<<<<<..<<
<<...<<<<<....>>>>>.>.>>>..>>>>.>>.>>>>>>....<<<<<
<<<<<<<..>>>.>.>>>>>>>>...........................
...<<<<.<<<.<<<.<<<<<<<<......>>>>.>>>>.>>>...>>>.
.>>>><<<<<.<<<..>>>.>>>>>
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqq Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution4.1 Å
Binding residue
(original residue number in PDB)		A167 E232 K233 P235 I238 G241 K281 R286
Binding residue
(residue number reindexed from 1)		A51 E92 K93 P95 I98 G101 K141 R146
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0042254 ribosome biogenesis
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:6lqq, PDBe:6lqq, PDBj:6lqq
PDBsum6lqq
PubMed32943522
UniProtP40546|FAF1_YEAST Protein FAF1 (Gene Name=FAF1)

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