Structure of PDB 6lqr Chain RE Binding Site BS02

Receptor Information
>6lqr Chain RE (length=1079) Species: 559292 (Saccharomyces cerevisiae S288C) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SNIFKLQIDELLEQVKLKQKHVLKVEKFLHKLYDILQEIPDWEEKSLAEV
DSFFKNKIVSVPFVDPKPIPQNTNYKFNYKKPDISLIGSFALKAGIYQPN
GSSIDTLLTMPKELFEKKDFLNFRCLHKRSVYLAYLTHHLLILLKKDKLD
SFLQLEYSYFDNDPLLPILRISCSKDYNFYKTRFSINLLIGFPYKVFEPK
KLLPNRNCIRILPATPLYNFSVLSSSTHENYLKYLYKTKKQTESFVEATV
LGRLWLQQRGFSSNMSHSGSLGGFGTFEFTILMAALLNGGGINSNKILLH
GFSSYQLFKGVIKYLATMDLCHDGHLQFHSNPASKYIDEGFQTPTLFDKS
TKVNILTKMTVSSYQILKEYAGETLRMLNNVVQDQFSNIFLTNISRFDNL
KYDLCYDVQLPLGKYNNLETSLAATFGSMERVKFITLENFLAHKITNVAR
YALGDRIKYIQIEMVGQKSDFPITKRKVYSNTGGNHFNFDFVRVKLIVNP
SECDKLVTKGPAHSETMSTEAAVFKNFWGIKSSLRRFKDGSITHCCVWST
SSSEPIISSIVNFALQKHVSKKAQISNETIKKFHNFLPLPNLPSSAKTSV
LNLSSFFNLKKSFDDLYKIIFQMKLPLSVKSILPVGSAFRYTSLCQPVPF
AYSDPDFFQDVILEFETSPKWPDEITSLEKAKTAFLLKIQEELSANSSTY
RSFFSRDESIPYNLEIVTLNILTPEGYGFKFRVLTERDEILYLRAIANAR
NELKPELEATFLKFTAKYLASVRHTRTLENISHSYQFYSPVVRLFKRWLD
THLLLGHITDELAELIAIKPFVDPAPYFIPGSLENGFLKVLKFISQWNWK
DDPLILDLVKPEERLTLAQYKGIQMNFTNLRNSDPNGTHLQFFVASKNDP
SGILYSSGIPLPIATRLTALAKVAVNLLQTHGLNQQTINLLFTPGLKDYD
FVVDLRTPIGLKSSCGILSAPSNFPENLNDLSEKMDPTYQLVKYLNLKYK
NSLILSSRKYIGVNGGEKGDKNVITGLIKPLFKGAHKFRVNLDCNVKPVD
DENVILNKEAIFHEIAAFGNDMVINFETD
Ligand information
>6lqr Chain X1 (length=22) Species: 559292 (Saccharomyces cerevisiae S288C) [Search peptide sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
AAAAAAAAAAAAAAAAAAAAAA
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6lqr Cryo-EM structure of 90 S small ribosomal subunit precursors in transition states.
Resolution8.6 Å
Binding residue
(original residue number in PDB)		T1062 R1063 V1070 T1090 G1092 P1188
Binding residue
(residue number reindexed from 1)		T915 R916 V923 T943 G945 P1030
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003674 molecular_function
GO:0003723 RNA binding
GO:0005515 protein binding
Biological Process
GO:0000028 ribosomal small subunit assembly
GO:0006364 rRNA processing
GO:0006409 tRNA export from nucleus
GO:0030490 maturation of SSU-rRNA
GO:0042254 ribosome biogenesis
GO:0042790 nucleolar large rRNA transcription by RNA polymerase I
GO:0060962 regulation of ribosomal protein gene transcription by RNA polymerase II
Cellular Component
GO:0005634 nucleus
GO:0005654 nucleoplasm
GO:0005730 nucleolus
GO:0030686 90S preribosome
GO:0032040 small-subunit processome
GO:0032545 CURI complex
GO:0034456 UTP-C complex
GO:1990904 ribonucleoprotein complex

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Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:6lqr, PDBe:6lqr, PDBj:6lqr
PDBsum6lqr
PubMed32943522
UniProtP53254|UTP22_YEAST U3 small nucleolar RNA-associated protein 22 (Gene Name=UTP22)

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