Structure of PDB 4d61 Chain Q Binding Site BS02

Receptor Information
>4d61 Chain Q (length=139) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QSVQVFGRKKTATAVAHCKRGNGLIKVNGRPLEMIEPRTLQYKLLEPVLL
LGKERFAGVDIRVRVKGGGHVAQIYAIRQSISKALVAYYQKYVDEASKKE
IKDILIQYDRTLLVADPRRCESKKFGGPGARARYQKSYR
Ligand information
>4d61 Chain j (length=201) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaaaaugugaucuugcuuguaaauacaauuuugagagguuaauaaauuac
aaguagugcuauuuuuguauuuagguuagcuauuuagcuuuacguuccag
gaugccuaguggcagccccacaauauccaggaagcccucucugcgguuau
ucagauuagguagucgaaaaaccuaagaaauuuaccuuaaggcuuccucg
a
<<.............<<<<<<<.<........(((((......>..>>>>
>>>...........>>......<<<<..<<<....>>>......((((..
(..>>>>.<<<<.....>>>>.....)..))))...)))))....[[..(
((.(((.<<<<.))))))..]]...........>>>>.............
.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB4d61 Cryo-Em of Ribosomal 80S Complexes with Termination Factors Reveals the Translocated Cricket Paralysis Virus Ires.
Resolution9.0 Å
Binding residue
(original residue number in PDB)		Y145 R146
Binding residue
(residue number reindexed from 1)		Y138 R139
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0006364 rRNA processing
GO:0006412 translation
GO:0042274 ribosomal small subunit biogenesis
GO:1990830 cellular response to leukemia inhibitory factor
Cellular Component
GO:0005634 nucleus
GO:0005730 nucleolus
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022626 cytosolic ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:0032040 small-subunit processome
GO:0045202 synapse
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:4d61, PDBe:4d61, PDBj:4d61
PDBsum4d61
PubMed25601755
UniProtG1SGX4|RS16_RABIT Small ribosomal subunit protein uS9 (Gene Name=RPS16)

[Back to BioLiP]