Structure of PDB 8xi4 Chain O Binding Site BS02

Receptor Information
>8xi4 Chain O (length=79) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
KCEPSQFQCTNGRCITLLWKCDGDEDCVDGSDEKNCVKKTCAESDFVCNN
GQCVPSRWKCDGDPDCEDGSDESPEQCHM
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain8xi4 Chain O Residue 202 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
[Spin on] [Spin off] [Reset]
[High quality] [Low quality]
[White background] [Black background]
PDB8xi4 The receptor VLDLR binds Eastern Equine Encephalitis virus through multiple distinct modes.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		W89 D92 D96 D102 E103
Binding residue
(residue number reindexed from 1)		W58 D61 D65 D71 E72
Annotation score4
External links
PDB RCSB:8xi4, PDBe:8xi4, PDBj:8xi4
PDBsum8xi4
PubMed39127734
UniProtP98155|VLDLR_HUMAN Very low-density lipoprotein receptor (Gene Name=VLDLR)

[Back to BioLiP]