Structure of PDB 6h58 Chain O Binding Site BS02

Receptor Information

>6h58 Chain O (length=116) Species: 679895 (Escherichia coli BW25113)

DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF

Ligand information

>6h58 Chain B (length=120)

ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggcaa

<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<.......<<<<<<<<...>>>>>>>>...
....>>...>>>>>>>>>>.

Receptor-Ligand Complex Structure

Structure summary

• PDB: 6h58 Structure of a hibernating 100S ribosome reveals an inactive conformation of the ribosomal protein S1.
• Resolution: 7.9 Å
• Binding residue (original residue number in PDB): K3 R15 R25 H29 R30 T31 P32 R33 H34 Y36 Q38 G44 S45 E46 V47 Y64 N67 K68 H100 G101 R102
• Binding residue (residue number reindexed from 1): K2 R14 R24 H28 R29 T30 P31 R32 H33 Y35 Q37 G43 S44 E45 V46 Y63 N66 K67 H99 G100 R101

Gene Ontology

Molecular Function

• GO:0003735 structural constituent of ribosome
• GO:0008097 5S rRNA binding
• GO:0019843 rRNA binding

Biological Process

• GO:0002181 cytoplasmic translation
• GO:0006412 translation

Cellular Component

• GO:0005737 cytoplasm
• GO:0005829 cytosol
• GO:0005840 ribosome
• GO:0022625 cytosolic large ribosomal subunit
• GO:1990904 ribonucleoprotein complex

External links

• PDB: RCSB:6h58, PDBe:6h58, PDBj:6h58
• PDBsum: 6h58
• PubMed: 30177741
• UniProt: P0C018|RL18_ECOLI Large ribosomal subunit protein uL18 (Gene Name=rplR)