Structure of PDB 7pas Chain N Binding Site BS02

Receptor Information
>7pas Chain N (length=83) Species: 272634 (Mycoplasmoides pneumoniae M129) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
QIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKR
GLYAKVSKRKRLLKYLKHNDLEAYRNLVKTLNL
Ligand information
>7pas Chain 5 (length=1493) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucugagaguuugauccuggcucaggauuaacgcuggcggcaugccuaaua
caugcaagucgaucgaaaguaguaauacuuuagaggcgaacgggugagua
acacguauccaaucuaccuuauaaugggggauaacuaguugaaagacuag
cuaauaccgcauaagaacuuugguucgaaucaaaguugaaaggaccugca
aggguucguuauuugaugagggugcgccauaucagcuaguugguggggua
acggccuaccaaggcaaugacguguagcuaugcugagaaguagaauagcc
acaaugggacugagacacggcccauacuccuacgggaggcagcaguaggg
aauuuuucacaaugagcgaaagcuugauggagcaaugccgcgugaacgau
gaaggucuuuaagauuguaaaguucuuuuauuugggaagaaugacuuuag
cagguaauggcuagaguuugacuguaccauuuugaauaagugacgacuaa
cuaugugccagcagucgcgguaauacauaggucgcaagcguuauccggau
uuauugggcguaaagcaagcgcaggcggauugaaaagucugguguuaaag
gcagcugcuuaacaguuguaugcauuggaaacuauuaaucuagagugugg
uagggaguuuuggaauuucauguggagcggugaaaugcguagauauauga
aggaacaccaguggcgaaggcgaaaacuuaggccauuacugacgcuuagg
cuugaaaguguggggagcaaauaggauuagauacccuaguaguccacacc
guaaacgauagauacuagcugucggggcgauccccucgguagugaaguua
acacauuaaguaucucgccuggguaguacauucgcaagaaugaaacucaa
acggaauugacggggacccgcacaagugguggagcauguugcuuaauucg
acgguacacgaaaaaccuuaccuagacuugacauccuuggcaaaguuaug
gaaacauaaugccgagugacagguggugcaugguugucgucagcucgugu
cgugagauguuggguuaagucccgcaacgagcgcaacccuuaucguuagu
uacauugucuagcgagacugcuaaugcaaauuggaggaaggaagggauga
cgucaaaucaucaugccccuuaugucuagggcugcaaacgugcuacaaug
gccaauacaaacagucgccagcuuguaaaagugagcaaaucuguaaaguu
ggucucaguucggauugagggcugcaauucguccucaugaagucggaauc
acuaguaaucgcgaaucagcuaugucgcggugaauacguucucgggucuu
guacacaccgcccgucaaacuaugaaagcugguaauauuuaaaaacgugu
ugcuaaccauuaggaagcgcaugucaaggauagcaccggugauuggaguu
aagucguaacaagguaccccuacgagaacguggggguggauca
.....<<<<..[.(((..>>>>.<<<<.<<<<<..<<<<<<<<.<....<
.......<<<..<<.<<<<<<....>>>>>>.>>>>>......<<.....
...<<<<<<<..<<...<...<<<.<.<<.....<<<<<<....>>>>>>
......>>.>.....<<<<<<<<<....>>>>>>>>>....<<<<<<...
.>>>>>>.>>>...>..>>>>>>>>>.<<<....<<<..<<<<<<<<...
....>>>>>>>>>>>......>>>..<<<<<<<<....>>>>...>>>>.
>>.<<<<<............>>>>>.<<<<<..>>>>>.......>..>.
......<<<....<<<<....>>>>..>>>..>>.>>>>>>..<<<<...
....<<<.....>>>......>>>>.......<<<........<<<<<<<
<........>>>>>>>>.........>>>..........<<<<<(((...
<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>>>>>....
......<<<((.....<<<<...<<<.<<<<<<..<<<<<<<<<<.....
<<<<<<<.....>>>>>>>..>>>>>>>>..>>.>>>>>>...<<<.<<<
<...<<<<<<<....<<<<<.<<<..<<........>>.....>>>.>>>
>>...........<<....>>.>>>>>>>..>>>>..>>>...>>>...>
>>>...<<<<<<<...<<...<<<<.<.....>.>>>>...>>>>>>>>.
.>.......<<<<<<..<<<<<<<<<<......>>>>>>>>>>...<<..
))>>.....>>>>>>.>>>.<<......<<<<<....>>>>>....>>..
..))).]<<<<<..<<<<<<.<<..<<<<...<<<<<.<<<<......<<
........>>..........<<<<<<<......<<<<<........<<<<
....>>>>.....>>>.>>.<<<.<<<..<<<<<<.<.....<<<<<<<<
<....>>>..<<<<......>>>>..>>>>>>.....<<<<.<<<<.<..
.........>.>>>>.....<<<<<....>>>>>........>>>>....
.>...>>>...>>>>>>>>>...>>>>>>>...>>.>>.>>>>>.....<
<<<<<<.....<<<..<<..<<<<....>>>>..>>....>>>....>>>
>>>>......<..<.<<<<<<..........>>>>>>>...>......>>
>>.....<<<<<<<..........>>>>>>>......>>...>>>>>>.>
>>.>>....<.<.<...<<<<.<<...<<<<<<.....<.....<<<<<<
.<<<..<<....>>.>>>>>>>>>...>......>>>>>>...>>.>>>>
....>>...>.....<<<<<<<<<....>>>>>>>>>......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7pas Visualizing translation dynamics at atomic detail inside a bacterial cell.
Resolution16.0 Å
Binding residue
(original residue number in PDB)		Q2 I3 K5 N6 I9 H15 K17 D18 V19 G20 S21 I22 Q25 Q35 H39 N43 K44 K45 D46 F47 I48 K50 R51 Y54 A55 S58 R62 L63 Y66 H69 N70 D71
Binding residue
(residue number reindexed from 1)		Q1 I2 K4 N5 I8 H14 K16 D17 V18 G19 S20 I21 Q24 Q34 H38 N42 K43 K44 D45 F46 I47 K49 R50 Y53 A54 S57 R61 L62 Y65 H68 N69 D70
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005737 cytoplasm
GO:0005840 ribosome
GO:0022627 cytosolic small ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:7pas, PDBe:7pas, PDBj:7pas
PDBsum7pas
PubMed36171285
UniProtP75173|RS15_MYCPN Small ribosomal subunit protein uS15 (Gene Name=rpsO)

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