Structure of PDB 5yi3 Chain N Binding Site BS02
Receptor Information
>5yi3 Chain N (length=144) Species:
272623
(Lactococcus lactis subsp. lactis Il1403) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
SLANQIDQFLGTIMQFAENKHEILLGKSESDVKLTSTQEHILMLLAEQIS
TNAKIAEKLKISPAAVTKALKKLQEQELIKSSRATNDERVVLWSLTEKAV
PVAKEHATHHEKTLSTYQELGNKFTDEEQEVISKFLSALTEEFQ
Ligand information
>5yi3 Chain P (length=16) [
Search DNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
tgttaactagttaaca
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
5yi3
Allosteric histidine switch for regulation of intracellular zinc(II) fluctuation.
Resolution
2.9 Å
Binding residue
(original residue number in PDB)
H23 T37 T39 S64 A67 K70
Binding residue
(residue number reindexed from 1)
H21 T35 T37 S62 A65 K68
Binding affinity
PDBbind-CN
: Kd=0.55uM
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003677
DNA binding
GO:0003700
DNA-binding transcription factor activity
GO:0008270
zinc ion binding
GO:0046872
metal ion binding
Biological Process
GO:0006355
regulation of DNA-templated transcription
View graph for
Molecular Function
View graph for
Biological Process
External links
PDB
RCSB:5yi3
,
PDBe:5yi3
,
PDBj:5yi3
PDBsum
5yi3
PubMed
29229866
UniProt
Q9CDU5
[
Back to BioLiP
]