Structure of PDB 9bct Chain M Binding Site BS02

Receptor Information
>9bct Chain M (length=648) Species: 311400 (Thermococcus kodakarensis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIRRETFVDDILKEIREIIVQMVPREAGITDVEFEGPELVIYVKNPEAMM
KDGELIKNLAKVLKKRISVRPDPDILLPPEKAEELIKQLVPPEAEITNIS
FDPSVGEVLIEARKPGLVIGKNGETLRLITQKVHWAPRVVRTPPIQSQTI
YSIRSILQTESKDRRKFLRQVGRNIYRKSEYKSRWIRITGLGGFREVGRS
ALLVQTDESYVLVDFGVNIAALKDPTKAYPHFDAPEFRYVLDEGLLDAII
ITHAALDHSGMLPYLFRYKLFDGPIYTTPPTRDLMTLLQQDFIEIQHMNG
VEPLYRPKDIKEVIKHTITLDYGEVRDIAPDIRLTLHNAGHILGSSIVHL
HIGNGLHNIAITGDFKFIPTRLFEPAVSRFPRLETLVMESTYGGSNDYQM
PREEAEKRLIEVIHQTLKRGGKVLIPAMAVGRAQEIMMVLEEYARVGGIE
VPIYLDGMIWEATAIHTAYPEYLSKHIREQIFHEGYNPFLNPIFKSVANS
RERQDIIDSGEPAIIIATSGMLVGGPSVEYFKQLAPDPKNSIIFVSYQAE
GTLGRQVQRGLREIPIVGEDGRTEVINVNMEVHTIDGFSGAADRRELMSY
VARVRPRPERIITVHGEAHKCLDLSSSIHKKFGISTRAPNNLDAIRLK
Ligand information
Ligand IDZN
InChIInChI=1S/Zn/q+2
InChIKeyPTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Zn+2]
FormulaZn
NameZINC ION
ChEMBLCHEMBL1236970
DrugBankDB14532
ZINC
PDB chain9bct Chain M Residue 701 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB9bct Structural basis of archaeal FttA-dependent transcription termination
Resolution2.5 Å
Binding residue
(original residue number in PDB)		H253 D257 H258 D364 H615
Binding residue
(residue number reindexed from 1)		H253 D257 H258 D364 H615
Annotation score4
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003723 RNA binding
GO:0004519 endonuclease activity
GO:0004521 RNA endonuclease activity
GO:0004527 exonuclease activity
GO:0046872 metal ion binding
Biological Process
GO:0006353 DNA-templated transcription termination

View graph for
Molecular Function
View graph for
Biological Process
External links
PDB RCSB:9bct, PDBe:9bct, PDBj:9bct
PDBsum9bct
PubMed
UniProtQ5JH24|FTTA_THEKO Transcription termination factor FttA (Gene Name=fttA)

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