Structure of PDB 3ob0 Chain M Binding Site BS02

Receptor Information
>3ob0 Chain M (length=219) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
EVQLVESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVAS
ISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG
SDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSGGTAALGCLVKDY
FPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYI
CNVNHKPSNTKVDKKVEPK
Ligand information
Ligand IDYYH
InChIInChI=1S/C7H14O6/c1-2(8)6-4(10)3(9)5(11)7(12)13-6/h2-12H,1H3/t2-,3-,4-,5-,6+,7-/m0/s1
InChIKeyPZODEECXPHBZCU-QQABCQGCSA-N
SMILES
SoftwareSMILES
OpenEye OEToolkits 1.7.6C[C@@H]([C@@H]1[C@H]([C@@H]([C@@H]([C@H](O1)O)O)O)O)O
CACTVS 3.370C[CH](O)[CH]1O[CH](O)[CH](O)[CH](O)[CH]1O
CACTVS 3.370C[C@H](O)[C@H]1O[C@H](O)[C@@H](O)[C@@H](O)[C@@H]1O
ACDLabs 12.01OC1C(O)C(OC(O)C1O)C(O)C
OpenEye OEToolkits 1.7.6CC(C1C(C(C(C(O1)O)O)O)O)O
FormulaC7 H14 O6
Name7-deoxy-L-glycero-alpha-D-manno-heptopyranose
ChEMBL
DrugBank
ZINC
PDB chain3ob0 Chain B Residue 4 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB3ob0 A nonself sugar mimic of the HIV glycan shield shows enhanced antigenicity.
Resolution2.85 Å
Binding residue
(original residue number in PDB)		A31 H32 T33 K95 S100A D100B N100C D100D
Binding residue
(residue number reindexed from 1)		A31 H32 T33 K99 S105 D106 N107 D108
Annotation score1
External links