Structure of PDB 6y57 Chain Lm Binding Site BS02
Receptor Information
>6y57 Chain Lm (length=50) Species:
9606
(Homo sapiens) [
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IEPSLRQLAQKYNCDKMICRKCYARLHPRAVNCRKKKCGHTNNLRPKKKV
Ligand information
Ligand ID
ZN
InChI
InChI=1S/Zn/q+2
InChIKey
PTFCDOFLOPIGGS-UHFFFAOYSA-N
SMILES
Software
SMILES
CACTVS 3.341
[Zn++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0
[Zn+2]
Formula
Zn
Name
ZINC ION
ChEMBL
CHEMBL1236970
DrugBank
DB14532
ZINC
PDB chain
6y57 Chain Lm Residue 201 [
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Receptor-Ligand Complex Structure
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PDB
6y57
Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes.
Resolution
3.5 Å
Binding residue
(original residue number in PDB)
C96 C99 C110 C115
Binding residue
(residue number reindexed from 1)
C19 C22 C33 C38
Annotation score
4
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003735
structural constituent of ribosome
GO:0005515
protein binding
GO:0031386
protein tag activity
GO:0031625
ubiquitin protein ligase binding
Biological Process
GO:0002181
cytoplasmic translation
GO:0006412
translation
GO:0016567
protein ubiquitination
GO:0019941
modification-dependent protein catabolic process
GO:0036211
protein modification process
Cellular Component
GO:0005615
extracellular space
GO:0005634
nucleus
GO:0005654
nucleoplasm
GO:0005737
cytoplasm
GO:0005741
mitochondrial outer membrane
GO:0005765
lysosomal membrane
GO:0005783
endoplasmic reticulum
GO:0005789
endoplasmic reticulum membrane
GO:0005829
cytosol
GO:0005840
ribosome
GO:0005886
plasma membrane
GO:0010008
endosome membrane
GO:0022625
cytosolic large ribosomal subunit
GO:0022626
cytosolic ribosome
GO:0022627
cytosolic small ribosomal subunit
GO:0030666
endocytic vesicle membrane
GO:0031982
vesicle
GO:0045202
synapse
GO:0070062
extracellular exosome
GO:1990904
ribonucleoprotein complex
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Molecular Function
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Biological Process
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Cellular Component
External links
PDB
RCSB:6y57
,
PDBe:6y57
,
PDBj:6y57
PDBsum
6y57
PubMed
32268098
UniProt
P62987
|RL40_HUMAN Ubiquitin-ribosomal protein eL40 fusion protein (Gene Name=UBA52)
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