Structure of PDB 8oj8 Chain Ll Binding Site BS02

Receptor Information
>8oj8 Chain Ll (length=50) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
SSHKTFRIKRFLAKKQKQNRPIPQWIRMKTGNKIRYNSKRRHWRRTKLGL
Ligand information
>8oj8 Chain 8 (length=148) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
cgacucuuagcgguggaucacucggcucgugcgucgaugaagaacgcagc
uagcugcgagaauuaaugugaauugcaggacaugaucaucgacacuucga
acgcacuugcggccccgggcccggggcuacgccugucugagcgucgcu
.........................................<<<<<<<<<
....>>>>.....<.<<<......>>..........>>>..>...>>>..
..<<....>><<<<<<<<<>>>>>>>>>....................
Receptor-Ligand Complex Structure
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PDB8oj8 UFM1 E3 ligase promotes recycling of 60S ribosomal subunits from the ER
Resolution3.3 Å
Binding residue
(original residue number in PDB)		F7 R11 K15 K18 Q19 R21 I23 P24 W26 I27 K30 T31 K40
Binding residue
(residue number reindexed from 1)		F6 R10 K14 K17 Q18 R20 I22 P23 W25 I26 K29 T30 K39
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0002181 cytoplasmic translation
GO:0002227 innate immune response in mucosa
GO:0006412 translation
GO:0019731 antibacterial humoral response
GO:0050830 defense response to Gram-positive bacterium
GO:0061844 antimicrobial humoral immune response mediated by antimicrobial peptide
Cellular Component
GO:0005615 extracellular space
GO:0005737 cytoplasm
GO:0005829 cytosol
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit
GO:0022626 cytosolic ribosome
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8oj8, PDBe:8oj8, PDBj:8oj8
PDBsum8oj8
PubMed38383785
UniProtP62891|RL39_HUMAN Large ribosomal subunit protein eL39 (Gene Name=RPL39)

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