Structure of PDB 8i9y Chain Lh Binding Site BS02

Receptor Information
>8i9y Chain Lh (length=121) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
GKVKAGQLWSKNKEELTKILGELKTELSQLRIQKISSSGAKLNKIHDLRK
SIARVLTVINAKQRAQLRLFYKNKKYLPLDLRPKLTRALRRRLSKEDASR
VLEKTKKRLTHFPQRKYAVKA
Ligand information
>8i9y Chain C2 (length=256) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aaacuuucaacaacggaucucuugguucuggcaucgaugaagaacgcagc
gaaaugcgauaaguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgcccgccgguauuccggcgggcaugccuguucgag
cgucauuucaaccaucaagcccugggcuuguguuggggacccgcggcugc
ucgcgggcccugaaaagcaguggcgggcucgcuggcgggugccagccgua
aaaccc
.........................................<<<<<<<((
....>>>>.....<.<<<<.....))............>.>>>..>...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
...............<<<<<<...>>>>>>....<<<<.<<<<<<<....
>>>>>>>>>>>.........<<<<<<<<<<<<..>>>>>>.>>.>>>>..
......
Receptor-Ligand Complex Structure
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PDB8i9y Mechanism of 5S RNP recruitment and helicase-surveilled rRNA maturation during pre-60S biogenesis.
Resolution3.1 Å
Binding residue
(original residue number in PDB)		K8 A9 W13 L46 N47 K54 A57 R58 L60 T61 N64 R68 R72 L83 T90 R91 R94
Binding residue
(residue number reindexed from 1)		K4 A5 W9 L42 N43 K50 A53 R54 L56 T57 N60 R64 R68 L79 T86 R87 R90
Enzymatic activity
Enzyme Commision number 2.4.99.18: dolichyl-diphosphooligosaccharide--protein glycotransferase.
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0004576 oligosaccharyl transferase activity
GO:0004579 dolichyl-diphosphooligosaccharide-protein glycotransferase activity
GO:0016757 glycosyltransferase activity
GO:0046872 metal ion binding
Biological Process
GO:0006412 translation
GO:0006486 protein glycosylation
GO:0018279 protein N-linked glycosylation via asparagine
GO:0043687 post-translational protein modification
Cellular Component
GO:0005840 ribosome
GO:0016020 membrane
GO:1990904 ribonucleoprotein complex

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8i9y, PDBe:8i9y, PDBj:8i9y
PDBsum8i9y
PubMed37129998
UniProtG0S0D7

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