Structure of PDB 6zj3 Chain LZ Binding Site BS02

Receptor Information
>6zj3 Chain LZ (length=217) Species: 3039 (Euglena gracilis) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
VKAKRNFVEIGRVIYVRFGKNRDTLAVITDIIDHNWIFADGRAFPNGMKR
GAVNIKDIALTHMKLKMGHGLRHRHLKELVAKEDVLNKWKKTTVARRLEK
QKNKLNSTDLERWRIQYNRRQRSSLIKVKFNKLKKKALQTARRLHGKKNP
IPFADRKKPQKQAPKEGKVKKDDKGRKLKDSERRKIKKCRINYKSLAGWQ
LDVNPGPIAGSSLVSKV
Ligand information
>6zj3 Chain LF (length=456) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
uugaacaauggauccuacguggaccaugacugguaagcagugcuggugau
gcggggugcuccgagagcagacuuacagaucccgagugcuggcucauacu
cagaucccacaaaggauguugcuuacuagugcgcagcuccgaaaauggau
ggugcccaagucagugugucucccuuacagucugccaucgauguggcagc
caaggcagagcaucguuguguagaaagggcauggacaacagcugaucgug
uugggauugaucccggcuugaggcguugcccagagcagaucuugguugua
guagcgaguacuccaccuggagaggaguggcaacacaaccccgcugugug
cgguugaggacuggaguggagcagguuuccacaccaaacagccguugaau
gugggucaaccgaccgugagccaagugguaaguucaccgaacaaccaaag
cugccu
......................<<<<..<<<<.....>>>>..>>>>...
.<<<......>>>...<<<<<<<...<<..((.....<<<<<<.......
..<..........<<<.<<<<<.<<<..>>>.>>>>>>>>..........
))..>....>>>>>>........>>...>>>>>>><<.<<<<<<......
.........>>>>>>.>>.............<<<.<<<<.<<.......<
<<<<<<....>>>>>>>.....>>>>>>.>>>..................
..........<<<.<<<.........<<<<..........>>>>......
.>>>.>>>....................<<<<<.....<<.....>>..>
>>>>....................<<<.......>>>.............
......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB6zj3 Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.
Resolution3.15 Å
Binding residue
(original residue number in PDB)		F19 R23 H35 N36 N55
Binding residue
(residue number reindexed from 1)		F18 R22 H34 N35 N54
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Sat Nov 16 11:43:51 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '6zj3', asym_id = 'LZ', bs = 'BS02', title = 'Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='6zj3', asym_id='LZ', bs='BS02', title='Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003723,0003735,0005840,0006412', uniprot = '', pdbid = '6zj3', asym_id = 'LZ'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003723,0003735,0005840,0006412', uniprot='', pdbid='6zj3', asym_id='LZ')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>