Structure of PDB 8pv8 Chain LP Binding Site BS02

Receptor Information

>8pv8 Chain LP (length=171) Species: 759272 (Thermochaetoides thermophila DSM 1495) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

VRYAATEIAPTKSARARGSYLRVSFKNTRETAQAINGWKLQRALTFLQNV
IDKKEAVPMRRYAGSTGRTAQGKQWGVSRARWPVKSAQFLIGLLKNAEAN
ADAKGLDTGNLIIKHIQVNQAPKQRRRTYRAHGRINPYMSNPCHIELILT
EAEESHLSSRQRGVRIRRALT

Ligand information

>8pv8 Chain C2 (length=150) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

aaacuuucaacaacggaucucuugguucuggcaucgaugaagaacgcagc
gaaaugcgauaaguaaugugaauugcagaagaaucaucgaaucuuugaac
gcacauugcgcccgccgguauuccggcgggcaugccuguucgagcgucau

.........................................<<<<<<<<<
....>>>>.....<.<<<......>>........>>>..>...>>>....
<<.....>><<<<<<<<<....>>>>>>>>>...................

Receptor-Ligand Complex Structure

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Structure summary

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PDB	8pv8 Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.
Resolution	2.91 Å
Binding residue (original residue number in PDB)	R3 A5 R61 R62 N120 Q121 P123
Binding residue (residue number reindexed from 1)	R2 A4 R60 R61 N119 Q120 P122

Enzymatic activity

Enzyme Commision number

Gene Ontology

	Molecular Function
GO:0003735	structural constituent of ribosome

	Biological Process
GO:0002181	cytoplasmic translation
GO:0006412	translation

	Cellular Component
GO:0005840	ribosome
GO:0015934	large ribosomal subunit
GO:0022625	cytosolic large ribosomal subunit
GO:1990904	ribonucleoprotein complex

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Cellular Component

External links

PDB	RCSB:8pv8, PDBe:8pv8, PDBj:8pv8
PDBsum	8pv8
PubMed	37921038
UniProt	G0SGY1

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