Structure of PDB 8pv8 Chain LJ Binding Site BS02
Receptor Information
>8pv8 Chain LJ (length=168) Species:
759272
(Thermochaetoides thermophila DSM 1495) [
Search protein sequence
] [
Download receptor structure
] [
Download structure with residue number starting from 1
] [
View receptor structure
]
AQNPMRELRIQKLVLNISVGESGDRLTRAAKVLEQLSGQTPVYSKARYTV
RQFGIRRNEKIAVHVTVRGPKAEEILERGLKVKEYELRRRNFSETGNFGF
GISEHIDLGIKYDPSIGIYGMDFYCCMTRPGERVAKRRRCKSRIGASHRI
TREETIRWFKQRFDGIVR
Ligand information
>8pv8 Chain C4 (length=115) [
Search RNA sequence
] [
Download ligand structure
] [
Download structure with residue number starting from 1
] [
View ligand structure
]
acguacgaccauacccaguggaaagcacggcaucccguccgcucugcccu
aguuaagccacugagggcccgguuaguaguugggucgggaccagcgaauc
ccggguguuguacgu
<<<<<<<<<....<<<<<<<<.....<<<<<<............>>>>..
.>>....>>>>>>.>><<<<<<......<<<<<.......>>>>>.....
>>>>>>>>>>>>>>>
Receptor-Ligand Complex Structure
Global view
Local view
Structure summary
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
[
Spin on
] [
Spin off
] [
Reset
]
[
High quality
] [
Low quality
]
[
White background
] [
Black background
]
PDB
8pv8
Structural insights into coordinating 5S RNP rotation with ITS2 pre-RNA processing during ribosome formation.
Resolution
2.91 Å
Binding residue
(original residue number in PDB)
N8 M10 R11 Q44 T45 T71 R73 G136 R138 V139 K141 R142 R143 S147 G150 H153
Binding residue
(residue number reindexed from 1)
N3 M5 R6 Q39 T40 T66 R68 G131 R133 V134 K136 R137 R138 S142 G145 H148
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
Biological Process
GO:0006412
translation
Cellular Component
GO:0005840
ribosome
GO:0022625
cytosolic large ribosomal subunit
GO:1990904
ribonucleoprotein complex
View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB
RCSB:8pv8
,
PDBe:8pv8
,
PDBj:8pv8
PDBsum
8pv8
PubMed
37921038
UniProt
G0SHQ2
[
Back to BioLiP
]