Structure of PDB 8p5d Chain LF0 Binding Site BS02

Receptor Information
>8p5d Chain LF0 (length=231) Species: 1358809 (Spraguea lophii 42_110) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DLIAKKEQYNLRMEELQKKQQEQHLKRVEENKKYAEKRTVELLETYKKIA
LEQQLSEERMQKENKIYAPKDPHFYAVVLIKSPLRASNKIKKTLELFRLK
HINNCVLVKNNESSRQMLQKIRNFVAYGELKLKTLRELIYKRGSCHIFSE
KLNITNETLEDAFKNIRCIEEFIYELYFNDERFKELNNFLNPFKLTPPKG
GYKGRKAKDIIEGGAVGNHQDKIGELIKKMI
Ligand information
>8p5d Chain L70 (length=119) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
aguuacggccauaucuacugaaaaacaccggaucccguccgaucuccgaa
guuaagccaauaagagccaugcgaguauuaaggugggcgacuacuugaga
aagcguggugcuguaguuu
<<<<<<<<<....<<<<.<<......<<<<<..............>>>..
>>.....>>.>>.>><<<<<<<.....<<<<<..<<....>>.>>>>>..
..>>>>>>>>>>>>>>>>.
Receptor-Ligand Complex Structure
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PDB8p5d Spraguea lophii ribosome
Resolution10.8 Å
Binding residue
(original residue number in PDB)		Q123 R126 N127 R209 E216
Binding residue
(residue number reindexed from 1)		Q119 R122 N123 R205 E212
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0003735 structural constituent of ribosome
Biological Process
GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
Cellular Component
GO:0005840 ribosome
GO:0022625 cytosolic large ribosomal subunit

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8p5d, PDBe:8p5d, PDBj:8p5d
PDBsum8p5d
PubMed37709902
UniProtS7W946

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