Structure of PDB 5dgf Chain L8 Binding Site BS02
Receptor Information
>5dgf Chain L8 (length=233) Species:
559292
(Saccharomyces cerevisiae S288C) [
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NPLTHSTPKNFGIGQAVQPKRNLSRYVKWPEYVRVQRQKKILSIRLKVPP
TIAQFQYTLDRNTAAETFKLFNKYRPETAAEKKERLTKEAAAVAEAKSKQ
DASPKPYAVKYGLNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKM
GVPYAIVKGKARLGTLVNQKTSAVAALTEVRAEDEAALAKLVSTIDANFA
DKYDEVKKHWGGGILGNKAQAKMDKRAKNSDSA
Ligand information
>5dgf Chain 4 (length=158) [
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aaacuuucaacaacggaucucuugguucucgcaucgaugaagaacgcagc
gaaaugcgauacguaaugugaauugcagaauuccgugaaucaucgaaucu
uugaacgcacauugcgccccuugguauuccagggggcaugccuguuugag
cgucauuu
.........................................<<<<<<.<<
.....>>>.....(.<<<......>>..............>>>..)...>
>>....<<.....>><<<<<<<<<....>>>>>>>>>.............
........
Receptor-Ligand Complex Structure
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PDB
5dgf
Coping with proline stalling: structural basis of hypusine-induced protein synthesis by the eukaryotic ribosome
Resolution
3.3 Å
Binding residue
(original residue number in PDB)
W52 Y55 Q59 R60 R84 K181 R185
Binding residue
(residue number reindexed from 1)
W29 Y32 Q36 R37 R61 K158 R162
Enzymatic activity
Enzyme Commision number
?
Gene Ontology
Molecular Function
GO:0003723
RNA binding
GO:0003735
structural constituent of ribosome
Biological Process
GO:0000470
maturation of LSU-rRNA
GO:0002181
cytoplasmic translation
GO:0006364
rRNA processing
GO:0042254
ribosome biogenesis
Cellular Component
GO:0005737
cytoplasm
GO:0005829
cytosol
GO:0005840
ribosome
GO:0022625
cytosolic large ribosomal subunit
GO:1990904
ribonucleoprotein complex
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Molecular Function
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Cellular Component
External links
PDB
RCSB:5dgf
,
PDBe:5dgf
,
PDBj:5dgf
PDBsum
5dgf
PubMed
UniProt
P17076
|RL8A_YEAST Large ribosomal subunit protein eL8A (Gene Name=RPL8A)
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