Structure of PDB 8vsa Chain L18 Binding Site BS02

Receptor Information
>8vsa Chain L18 (length=116) Species: 562 (Escherichia coli) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
DKKSARIRRATRARRKLQELGATRLVVHRTPRHIYAQVIAPNGSEVLVAA
STVEKAIAEQLKYTGNKDAAAAVGKAVAERALEKGIKDVSFDRSGFQYHG
RVQALADAAREAGLQF
Ligand information
>8vsa Chain 5S (length=120) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ugccuggcggccguagcgcgguggucccaccugaccccaugccgaacuca
gaagugaaacgccguagcgccgaugguaguguggggucuccccaugcgag
aguagggaacugccaggcaa
<<<<<<<<<<.....<<<<<<<<....<<<<<<<.............>>>
>..>>>...>>>>>>.>>.<<...<.<.<<<<<<<<...>>>>>>>>...
>.>.>>...>>>>>>>>>>.
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB8vsa Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.
Resolution3.7 Å
Binding residue
(original residue number in PDB)		K3 R15 R25 H29 R30 T31 P32 R33 Y36 I40 G44 S45 E46 V47 V54 E55 K56 K63 Y64 N67 K68 H100 G101 R102
Binding residue
(residue number reindexed from 1)		K2 R14 R24 H28 R29 T30 P31 R32 Y35 I39 G43 S44 E45 V46 V53 E54 K55 K62 Y63 N66 K67 H99 G100 R101
Gene Ontology
--> -->
 
 
UnboundLocalError		Python 3.6.8: /usr/bin/python3
Tue Nov 26 14:30:42 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/html/BioLiP/pdb.cgi in <module>()
   1435     title=pdb2title(pdbid)
   1436     if bs.startswith("BS"):
=> 1437         pubmed,uniprot=display_interaction(pdbid,asym_id,bs,title)
   1438     else:
   1439         if lig3:
pubmed = '', uniprot = '', display_interaction = <function display_interaction>, pdbid = '8vsa', asym_id = 'L18', bs = 'BS02', title = 'Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.'
 /var/www/html/BioLiP/pdb.cgi in display_interaction(pdbid='8vsa', asym_id='L18', bs='BS02', title='Endogenous trans-translation structure visualizes the decoding of the first tmRNA alanine codon.')
   1295         display_ec(ec,csaOrig,csaRenu)
   1296     if go:
=> 1297         display_go(go,uniprot,pdbid,asym_id)
   1298     return pubmed,uniprot
   1299 
global display_go = <function display_go>, go = '0003735,0005840,0006412', uniprot = '', pdbid = '8vsa', asym_id = 'L18'
 /var/www/html/BioLiP/pdb.cgi in display_go(go='0003735,0005840,0006412', uniprot='', pdbid='8vsa', asym_id='L18')
    480         '''.replace("$namespace_link",namespace_link
    481           ).replace("$namespace",namespace
=>  482           ).replace("$uniprot",u
    483         ))
    484         for l,(term,name) in enumerate(go2aspect[Aspect]):
u undefined

UnboundLocalError: local variable 'u' referenced before assignment
      args = ("local variable 'u' referenced before assignment",)
      with_traceback = <built-in method with_traceback of UnboundLocalError object>