Structure of PDB 5v6m Chain L Binding Site BS02

Receptor Information

>5v6m Chain L (length=219) Species: 9986 (Oryctolagus cuniculus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]

AQVLTQTPSSVSAAVGGTVTIKCQSSQSVYPNNNLGWYQQKPGQPPKLLI
YEASTLASGVPSRFKGSGSGTQFTLTISDLECDDAATYYCLGAYDFTVAE
GAAFGGGTEVVVKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREA
KVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYAC
EVTHQGLSSPVTKSFNRGE

Ligand information

Ligand ID

InChI

InChI=1S/Ca/q+2

InChIKey

BHPQYMZQTOCNFJ-UHFFFAOYSA-N

SMILES

Software	SMILES
CACTVS 3.341	[Ca++]
ACDLabs 10.04 OpenEye OEToolkits 1.5.0	[Ca+2]

Formula

Name

CALCIUM ION

PDB chain

5v6m Chain H Residue 301 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]

Receptor-Ligand Complex Structure

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Structure summary

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PDB	5v6m Increased epitope complexity correlated with antibody affinity maturation and a novel binding mode revealed by structures of rabbit antibodies against the third variable loop (V3) of HIV-1 gp120.
Resolution	1.9 Å
Binding residue (original residue number in PDB)	A97 F98
Binding residue (residue number reindexed from 1)	A103 F104
Annotation score	4

External links

PDB	RCSB:5v6m, PDBe:5v6m, PDBj:5v6m
PDBsum	5v6m
PubMed	29343576

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