Structure of PDB 5mmm Chain L Binding Site BS02

Receptor Information
>5mmm Chain L (length=121) Species: 3562 (Spinacia oleracea) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
MIQPQTHLNVADNSGARELMCIRIIGASNRRYARIGDVIVAVIKEAIPNT
PLERSEVIRAVVVRTCKELKRDNGMIIRYDDNAAVIIDQEGNPKGTRIFG
AIARELRQKFAKIVSLAPEVL
Ligand information
>5mmm Chain a (length=1484) [Search RNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
ucucauggagaguucgauccuggcucaggaugaacgcuggcggcaugcuu
aacacaugcaagucggacgggaagugguguuuccaguggcggacggguga
guaacgcguaagaaccugcccuugggaggggaacaacagcuggaaacggc
ugcuaauaccccguaggcugagaagcaaaaggaggaauccgcccgaggag
gggcucgcgucugauuagcuaguuggugagguaauagcuuaccaaggcga
ugaucaguagcugguccgagaggaugaucagccacacugggacugagaca
cggcccagacuccuacgggaggcagcaguggggaauuuuccgcaaugggc
gaaagccugacggagcaaugccgcguggaggcagaaggcccacgggucgu
gaacuucuuuucccggagaagaagcaaugacgguauccggggaauaagca
ucggcuaacucugugccagcagccgcgguaagacagaggaugcaagcguu
auccggaaugauugggcguaaagcgucuguagguggcuuuuuaaguccgc
cgucaaaucccagggcucaacccuggacaggcgguggaaacuaccaagcu
ggaguacgguaggggcagagggaauuuccgguggagcggugaaaugcgua
gagaucggaaagaacaccaacggcgaaagcacucugcugggccgacacug
acacugagagacgaaagcuaggggagcgaaugggauuagauaccccagua
guccuagccguaaacgauggauacuaggcgcugugcguaucgacccgugc
aguguuguagcuaacgcguuaaguaucccgccuggggaguacguucgcaa
gaaugaaacucaaaggaauugacgggggcccgcacaagcgguggagcaug
ugguuuaauucgaugcaaagcgaagaaccuuaccagggcuugacaugccg
cgaauccucuugaaagagaggggugccuucgggaacgcggacacaggugg
ugcauggcugucgucagcucgugccguaagguguuggguuaagucccgca
acgagcgcaacccucguguuuaguugccaacguugaguuuggaacccuga
acagacugccggugauaagccggaggaaggugaggaugacgucaagucau
caugccccuuaugcccugggcgacacacgugcuacaauggccgggacaaa
gggucgcgaucccgcgagggugagcuaaccccaaaaacccguccucaguu
cggauugcaggcugcaacucgccugcaugaagccggaaucgcuaguaauc
gccggucagccauacggcggugaauucguucccgggccuuguacacaccg
cccgucacacuaugggagcuggccaugcccgaagucguuaccuuaaccgc
aaggagggggaugccgaaggcagggcuagugacuggagugaagucguaac
aagguagccguacuggaaggugcggcuggaucac
.........<<<<..[.((((.>>>>.<<<<.<<<<<..<<<<<<<<...
..<<<.<<<..<<<..<<.<<<<<.....>>>>>.>>>>>......<<..
.....<<<<.<<..<<<..<<<<<<<.<<<<.....<<<<<......>>>
>>......>>>>....<<<....>>>....<<<....>>>.>>>>>>>.>
>>.>>.>>>><<<....<<<..<<<<<<<<.......>>>>>>>>>>>..
....>>>..<<<<<<<<....>>>>...>>>>.>>.<<<<<.<.......
..>>>>>>.<<<<....>>>>...>>>>>>.........<<<....<<<<
....>>>>..>>>..>>.>>>>>>..<<<<......<<<<....>>>>..
...>>>>....<<<<<<..................>>>>>>......<<<
<<(((...<<<<<.....<<.)))>>.......>>>>>>>>>>..>>>>>
>>>>..........<<<((.....<<<<...<<<.<<<<..<.<<<<<<<
<<<<.....<<<<<<.....>>>>>>...>>>>>>>>>..>>>..>>>>.
..<<<.<<<<...<<<<<<<....<<<<<<<<...<<<......>>>...
...>>>>>>>.>..........<<....>>.>>>>>>>..>>>>..>>>.
..>>>...>>>>....<<<<<<...<<...<<<<.<.....>.>>>>...
>>>>>>>>..........<<<<<<..<<<<<<<<<<<........>>>>>
>>>>>>...<<..))>>.....>>>>>>.>>>.<<<......<<<<....
>>>>....>>>..)))).]<<<<<.<<<<<<<.<<.<<<<<<..<<<<<<
<<<<......<<........>>..........<<<<<<<......<<<<<
<<..<<<<<<<....>>>>>>>...<<....>>..>>>>>.>>.<<<.<<
<..<<<<<<.......<<<<<<<<<....>>>..<<<<......>>>>..
>>>>>>.....<<<<.<<<<<<<...<<<<........>>>>....>>>>
>>>.....<<<<<.....>>>>>........>>>>.........>>>...
>>>>>>>>>...>>>>>>>...>>.>>>>>>>>.....<<.<<<<.....
<<<..<<...<<<....>>>...>>....>>>.....>>>>.>>......
<....<<<<<<<........>>>>>>>....>.....>>>>>>....<<<
<<<<..........>>>>>>>......>>...>>>>>>>>>>.>>....<
..<<.<.<<<<.<<<..<<<<<<<.<<<<....<.<<<<.<<<<..<<..
..>>.>>>>>>>>.>...>>>>.>>>>>>>..>>>.>>>>..>.>>...>
.....<<<<<<<<<....>>>>>>>>>.......
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB5mmm The complete structure of the chloroplast 70S ribosome in complex with translation factor pY.
Resolution3.4 Å
Binding residue
(original residue number in PDB)		R17 N49 R97
Binding residue
(residue number reindexed from 1)		R17 N49 R97
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003735 structural constituent of ribosome
GO:0019843 rRNA binding
GO:0070180 large ribosomal subunit rRNA binding
Biological Process
GO:0006412 translation
Cellular Component
GO:0005840 ribosome
GO:0009507 chloroplast
GO:0015934 large ribosomal subunit
GO:0022625 cytosolic large ribosomal subunit
GO:1990904 ribonucleoprotein complex

View graph for
Molecular Function
View graph for
Biological Process
View graph for
Cellular Component
External links
PDB RCSB:5mmm, PDBe:5mmm, PDBj:5mmm
PDBsum5mmm
PubMed28007896
UniProtP09596|RK14_SPIOL Large ribosomal subunit protein uL14c (Gene Name=rpl14)

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