Structure of PDB 4llf Chain L Binding Site BS02

Receptor Information
>4llf Chain L (length=291) Species: 12143 (Cucumber necrosis virus) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
AKGSVRITHREYVSVLSGTNGEFLRNNGTGPNNDFSINPLNPFLFPWLVN
IAANFDQYKFNSLRFEYVPLVNTTTNGRVALYFDKDSEDPGPDDRAALAN
YAHLSEISPWAITKLTVPTDNVKRFISDTSSGDPKLINLGQFGWVAYSGP
TAELGDIFVEYTVDLFEAQPTSPLLESLFRESASSVQTRMGLPYFSLEVA
SATDLVWQARVPGTYVVTIIFNSTVGGLTPSISGGGTINSSFSVSTAGSS
AYVANITIRVNANLSLSGLTGATNAQLFAVRAITENAVQVV
Ligand information
Ligand IDCA
InChIInChI=1S/Ca/q+2
InChIKeyBHPQYMZQTOCNFJ-UHFFFAOYSA-N
SMILES
SoftwareSMILES
CACTVS 3.341[Ca++]
ACDLabs 10.04
OpenEye OEToolkits 1.5.0		[Ca+2]
FormulaCa
NameCALCIUM ION
ChEMBL
DrugBankDB14577
ZINC
PDB chain4llf Chain M Residue 402 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
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PDB4llf Atomic structure of cucumber necrosis virus and the role of the capsid in vector transmission.
Resolution2.8891 Å
Binding residue
(original residue number in PDB)		D173 D175 D178
Binding residue
(residue number reindexed from 1)		D84 D86 D89
Annotation score4
Enzymatic activity
Enzyme Commision number ?
Gene Ontology
Molecular Function
GO:0003723 RNA binding
GO:0005198 structural molecule activity
Cellular Component
GO:0019028 viral capsid
GO:0039617 T=3 icosahedral viral capsid

View graph for
Molecular Function
View graph for
Cellular Component
External links
PDB RCSB:4llf, PDBe:4llf, PDBj:4llf
PDBsum4llf
PubMed24006433
UniProtP15183|CAPSD_CNV Capsid protein (Gene Name=ORF2)

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