Structure of PDB 8j90 Chain K Binding Site BS02

Receptor Information
>8j90 Chain K (length=504) Species: 3702 (Arabidopsis thaliana) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
ETVIKLQNELCPLLTGGQLKSYQLKGVKWLISLWQNGLNGILADQMGLGK
TIQTIGFLSHLKGNGLDGPYLVIAPLSTLSNWFNEIARFTPSINAIIYHG
DKNQRDELRRKHMPKTVGPKFPIVITSYEVAMNDAKRILRHYPWKYVVID
EGHRLKNHKCKLLRELKHLKMDNKLLLTGTPLQNNLSELWSLLNFILPDI
FTSHDEFESWFDEEEEKRRAQVVSKLHGILRPFILRRMKCDVELSLPRKK
EIIMYATMTDHQKKFQEHLVNNTLEAHLGENAKLNNLVIQLRKNCNHPDL
LQGQIDGSYLYPPVEEIVGQCGKFRLLERLLVRLFANNHKVLIFSQWTKL
LDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCSIFLLSTRA
GGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQ
SIETRVLKRAYSKLKLEHVVIGQQTDISDADLDRLLDRVKGPGWEVVLPS
SGGM
Ligand information
>8j90 Chain J (length=111) [Search DNA sequence] [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
tgcctggagactagggagtaatccccttggcggttaaaacgcgggggaca
gcgcgtacgtgcgtttaagcggtgctagagctgtctacgaccaattgagc
ggcctcggcac
Receptor-Ligand Complex Structure
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PDB8j90 Molecular and structural basis of the chromatin remodeling activity by Arabidopsis DDM1.
Resolution4.71 Å
Binding residue
(original residue number in PDB)		L259 E312 N488 I491 K495 W549 T550 K551 G572 R579 S599 R601 A602 L605
Binding residue
(residue number reindexed from 1)		L76 E129 N286 I289 K293 W347 T348 K349 G370 R377 S397 R399 A400 L403
Gene Ontology
Molecular Function
GO:0003677 DNA binding
GO:0003678 DNA helicase activity
GO:0004386 helicase activity
GO:0005515 protein binding
GO:0005524 ATP binding
GO:0016787 hydrolase activity
GO:0016887 ATP hydrolysis activity
Biological Process
GO:0006338 chromatin remodeling
GO:0006346 DNA methylation-dependent heterochromatin formation
GO:0009294 DNA-mediated transformation
GO:0031507 heterochromatin formation
GO:0032197 retrotransposition
GO:0032508 DNA duplex unwinding
GO:0040029 epigenetic regulation of gene expression
Cellular Component
GO:0000786 nucleosome
GO:0005634 nucleus

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Molecular Function
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Biological Process
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Cellular Component
External links
PDB RCSB:8j90, PDBe:8j90, PDBj:8j90
PDBsum8j90
PubMed38992002
UniProtQ9XFH4|DDM1_ARATH ATP-dependent DNA helicase DDM1 (Gene Name=DDM1)

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