Structure of PDB 7wld Chain K Binding Site BS02

Receptor Information
>7wld Chain K (length=331) Species: 9606 (Homo sapiens) [Search protein sequence] [Download receptor structure] [Download structure with residue number starting from 1] [View receptor structure]
RSGHTNNWAVLVCTSRFWFNYRHVANTLSVYRSVKRLGIPDSHIVLMLAD
DMACNPRNPKPATVFSHKNMELNVYGDDVEVDYRSYEVTVENFLRVLTGR
IPPSTPRSKRLLSDDRSNILIYMTGHGGNGFLKFQDSEEITNIELADAFE
QMWQKRRYNELLFIIDTCQGASMYERFYSPNIMALASSQVGEDSLSHQPD
PAIGVHLMDRYTFYVLEFLEEINPASQTNMNDLFQVCPKSLCVSTPGHRT
DLFQRDPKNVLITDFFGSVRKVEITTETIKLQQMEPLKYAEQLPVAQIIH
QKPKLKDWHPPGGFILGLWALIIMVFFKTYG
Ligand information
Ligand IDP5S
InChIInChI=1S/C42H82NO10P/c1-3-5-7-9-11-13-15-17-19-21-23-25-27-29-31-33-40(44)50-35-38(36-51-54(48,49)52-37-39(43)42(46)47)53-41(45)34-32-30-28-26-24-22-20-18-16-14-12-10-8-6-4-2/h38-39H,3-37,43H2,1-2H3,(H,46,47)(H,48,49)/t38-,39+/m1/s1
InChIKeyTZCPCKNHXULUIY-RGULYWFUSA-N
SMILES
SoftwareSMILES
CACTVS 3.370CCCCCCCCCCCCCCCCCC(=O)OC[CH](CO[P](O)(=O)OC[CH](N)C(O)=O)OC(=O)CCCCCCCCCCCCCCCCC
CACTVS 3.370CCCCCCCCCCCCCCCCCC(=O)OC[C@H](CO[P](O)(=O)OC[C@H](N)C(O)=O)OC(=O)CCCCCCCCCCCCCCCCC
ACDLabs 12.01O=C(OC(COP(=O)(OCC(C(=O)O)N)O)COC(=O)CCCCCCCCCCCCCCCCC)CCCCCCCCCCCCCCCCC
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCCCCC(=O)OCC(COP(=O)(O)OCC(C(=O)O)N)OC(=O)CCCCCCCCCCCCCCCCC
OpenEye OEToolkits 1.7.6CCCCCCCCCCCCCCCCCC(=O)OC[C@H](COP(=O)(O)OC[C@@H](C(=O)O)N)OC(=O)CCCCCCCCCCCCCCCCC
FormulaC42 H82 N O10 P
NameO-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine;
phosphatidyl serine
ChEMBLCHEMBL4297669
DrugBankDB00144
ZINCZINC000085588270
PDB chain7wld Chain K Residue 702 [Download ligand structure] [Download structure with residue number starting from 1] [View ligand structure]
Receptor-Ligand Complex Structure
Global viewLocal viewStructure summary

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PDB7wld Molecular insights into biogenesis of glycosylphosphatidylinositol anchor proteins.
Resolution2.53 Å
Binding residue
(original residue number in PDB)
V381 T385 Y386
Binding residue
(residue number reindexed from 1)
V325 T329 Y330
Annotation score4
Enzymatic activity
Enzyme Commision number 3.-.-.-
Gene Ontology
Molecular Function
GO:0003923 GPI-anchor transamidase activity
GO:0008233 peptidase activity
Biological Process
GO:0006508 proteolysis
GO:0008218 bioluminescence
GO:0016255 attachment of GPI anchor to protein
Cellular Component
GO:0042765 GPI-anchor transamidase complex

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Molecular Function

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Biological Process

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Cellular Component
External links
PDB RCSB:7wld, PDBe:7wld, PDBj:7wld
PDBsum7wld
PubMed35551457
UniProtQ92643|GPI8_HUMAN GPI-anchor transamidase (Gene Name=PIGK)

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